PHYRE Protein Fold Recognition Server

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Protein Homology/analogY Recognition Engine V 2.0

Fold library entry viewer: c4nmlA_

Fold library id	PDB Header	Molecule	Title
c4nmlA_	PDB header: isomerase	Chain: A: PDB Molecule: ribulose 5-phosphate isomerase;	PDBTitle: 2.60 angstrom resolution crystal structure of putative ribose 5-2 phosphate isomerase from toxoplasma gondii me49 in complex with dl-3 malic acid

Links to external resources
Added to library: Sat Dec 7 08:22:43 2013

1 . . . . . . . . 10 . . . . . . . . . 20 . . . . . . . . . 30 . . . . . . . . . 40 . . . . . . . . . 50 . . . . . . . . . 60 . . . . . . . . . 70

Sequence X N P Q D K A K Q A V G Y F A V D T Y V R S G X K V G L G T G T T A K F V V E R I G Q R X Q E G S L K D L L C V P T S E A T R K Q A E S L G

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
T T
S T T S
S
S S T T T

. . . . . . . . . 80 . . . . . . . . . 90 . . . . . . . . . 100 . . . . . . . . . 110 . . . . . . . . . 120 . . . . . . . . . 130 . . . . . . . . . 140

Sequence I P L T T L D G I A D L D V A I D G A D E I L P P T L G L V K G R G G A L L R E K X I A A A A K T F I V A A D E T K L V S N G I G S T G A L

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
B
G G G
S T T T T
T T S
T
S G G G B
S S S B
S S S

. . . . . . . . . 150 . . . . . . . . . 160 . . . . . . . . . 170 . . . . . . . . . 180 . . . . . . . . . 190 . . . . . . . . . 200 . . . . . . . . . 210

Sequence P V E V V V F S G S H T K R L L S A L P S V K R H G G R A E F R K R A G A A Q E D I R E E D R F V T D N G N Y I V D L Y F T E T V P D L H E

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
S T T S T T
B
S S
S
G G G B
T T S
S S
B

. . . . . . . . . 220 . . . . . . . . . 230 . . . . . . . . . 240 . . . . . . . . .

Sequence X D K E L K S I P G V V E T G F F L D L A S V C L I G K A D G S V A T L T A E

Predicted secondary structure

SS confidence

Known secondary structure (DSSP) T S T T S
S
S
T T S

Download: PDB structure FASTA sequence
Hidden Markov model

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Please cite: The Phyre2 web portal for protein modeling, prediction and analysis

Kelley LA et al. Nature Protocols 10, 845-858 (2015) [paper] [Citation link]

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Michael Sternberg

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	1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70
Sequence	X	N	P	Q	D	K	A	K	Q	A	V	G	Y	F	A	V	D	T	Y	V	R	S	G	X	K	V	G	L	G	T	G	T	T	A	K	F	V	V	E	R	I	G	Q	R	X	Q	E	G	S	L	K	D	L	L	C	V	P	T	S	E	A	T	R	K	Q	A	E	S	L	G
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)																						T	T								S																T	T	S			S						S	S									T	T	T
	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140
Sequence	I	P	L	T	T	L	D	G	I	A	D	L	D	V	A	I	D	G	A	D	E	I	L	P	P	T	L	G	L	V	K	G	R	G	G	A	L	L	R	E	K	X	I	A	A	A	A	K	T	F	I	V	A	A	D	E	T	K	L	V	S	N	G	I	G	S	T	G	A	L
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)			B			G	G	G												S				T	T	T	T						T	T	S											T		S								G	G	G	B		S	S	S	B		S	S	S
	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210
Sequence	P	V	E	V	V	V	F	S	G	S	H	T	K	R	L	L	S	A	L	P	S	V	K	R	H	G	G	R	A	E	F	R	K	R	A	G	A	A	Q	E	D	I	R	E	E	D	R	F	V	T	D	N	G	N	Y	I	V	D	L	Y	F	T	E	T	V	P	D	L	H	E
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)						S	T	T											S						T	T							B		S	S					S			G	G	G	B				T	T	S									S	S		B
	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.
Sequence	X	D	K	E	L	K	S	I	P	G	V	V	E	T	G	F	F	L	D	L	A	S	V	C	L	I	G	K	A	D	G	S	V	A	T	L	T	A	E
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)							T	S	T	T					S				S			S							T	T	S