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 Protein Homology/analogY Recognition Engine V 2.0


 

Fold library entry viewer: c4nl8E_

Fold library idPDB HeaderMoleculeTitle
c4nl8E_PDB header: dna binding proteinChain: E: PDB Molecule: primosome assembly protein pria;PDBTitle: pria helicase bound to ssb c-terminal tail peptide


Added to library: Sat Jan 11 09:49:20 2014
 
Links to external resources


 1........10.........20.........30.........40.........50.........60.........70
Sequence VAHVALPVPLPRTFDYLLPEAGCRVRVPFGKQERIGIVKPVLDDEPVFSTTVWRLLMWAAEYYHHPIGDV
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Known secondary structure (DSSP)
B
SSSSS

B





TT

B


SS
SS
TT

 .........80.........90.........100.........110.........120.........130.........140
Sequence LFHALPVMLRQGKPASALRLNTEQATAVGAIHSAADRFSAWLLAGITGSGKTEVYLSVLENVLAQGRQAL
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Known secondary structure (DSSP) TS
TT

S





TTTTS
STTSSTT
 .........150.........160.........170.........180.........190.........200.........210
Sequence VMVPEIGLTPQTIARFRQRFNAPVEVLHSGLNDSERLSAWLKAKNGEAAIVIGTRSSLFTPFKDLGVIVI
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Known secondary structure (DSSP)

GGG


SS


TT

TT

SSGGGGG


SS
 .........220.........230.........240.........250.........260.........270.........280
Sequence DEEHDSSYKQQEGWRYHARDLAVWRAHSEQIPIILGSATPALETLHNVRQGKYRQLTLSPAQQHVLDLKG
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Known secondary structure (DSSP) TTT
GGGB

SSS

BT
SS

STT






TT
 .........290.........300.........310.........320.........330.........340.........350
Sequence QPLQAGLSPALISRMRQHLQADNQVILFLNRRGFAPALLCHDCGWIAECPRCDSYYTLHQAQHHLRCHHC
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Known secondary structure (DSSP)


BTTB
TTT



SS


TTT

B
B
SSSS
B
TTTT
SSS
 .........360.........370.........380.........390.........400.........410.........420
Sequence DSQRPIPRQCPSCGSTHLVPVGIGTEQLEQALAPLFPEVPISLAAVHRGGARILIGTQMLAKGHHFPDVT
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Known secondary structure (DSSP)




SS
TTT

S



TTTTTTSSS





GGGG
SSSS


TT


TT
 .........430.........440.........450.........460.........470.........480.........490
Sequence LVSLLDVDGALFSADFRSAERFAQLYTQVSGRQGEVILQTHHPEHPLLQTLLYKGYDAFAEQALAERQTM
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Known secondary structure (DSSP)

S
SSTTTT


S
TT

T
 .........500.........510.........520.........530.........540.........550.........560
Sequence QLPPWTSHVLIRNQQAPLFLQQLRNLLQASPLADEKLWVLGPVPALAWQILLQHPSRVRLQHIVSGTLAL
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Known secondary structure (DSSP) T
TTSS


SSSSS

TTT





S

 .........570.
Sequence IWVLDVDPIEG
Predicted secondary structure




SS confidence










Known secondary structure (DSSP)


S




Download:PDB structure FASTA sequence

Hidden Markov model

Image coloured by rainbow N → C terminus
Interactive 3D view in JSmol


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Accessibility Statement
Please cite: The Phyre2 web portal for protein modeling, prediction and analysis
Kelley LA et al. Nature Protocols 10, 845-858 (2015) [paper] [Citation link]
 
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Michael Sternberg 
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