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| Protein Homology/analogY Recognition Engine V 2.2 | |||||||
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| Fold library id | PDB Header | Molecule | Title |
|---|---|---|---|
| c4nkhA_ | PDB header: ligase | Chain: A: PDB Molecule: e3 ubiquitin-protein ligase ssph1; | PDBTitle: crystal structure of ssph1 lrr domain |
| Added to library: Sat Jan 11 09:56:12 2014 | |
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| Links to external resources | |
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|   | 1 | . | . | . | . | . | . | . | . | 10 | . | . | . | . | . | . | . | . | . | 20 | . | . | . | . | . | . | . | . | . | 30 | . | . | . | . | . | . | . | . | . | 40 | . | . | . | . | . | . | . | . | . | 50 | . | . | . | . | . | . | . | . | . | 60 | . | . | . | . | . | . | . | . | . | 70 |
| Sequence | E | Y | D | A | V | W | S | K | W | E | R | D | A | P | A | G | E | S | P | G | R | A | A | V | V | Q | E | M | R | D | C | L | N | N | G | N | P | V | L | N | V | G | A | S | G | L | T | T | L | P | D | R | L | P | P | H | I | T | T | L | V | I | P | D | N | N | L | T | S | L |
| Predicted secondary structure | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | |||||||||||||||||||||||||||||||
| SS confidence | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| Known secondary structure (DSSP) | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | T | T | T | S | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | S | S | S | S | T | T | S | ![]() | ![]() | ![]() | ![]() | S | S |   | . | . | . | . | . | . | . | . | . | 80 | . | . | . | . | . | . | . | . | . | 90 | . | . | . | . | . | . | . | . | . | 100 | . | . | . | . | . | . | . | . | . | 110 | . | . | . | . | . | . | . | . | . | 120 | . | . | . | . | . | . | . | . | . | 130 | . | . | . | . | . | . | . | . | . | 140 |
| Sequence | P | E | L | P | E | G | L | R | E | L | E | V | S | G | N | L | Q | L | T | S | L | P | S | L | P | Q | G | L | Q | K | L | W | A | Y | N | N | W | L | A | S | L | P | T | L | P | P | G | L | G | D | L | A | V | S | N | N | Q | L | T | S | L | P | E | M | P | P | A | L | R | E |
| Predicted secondary structure | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| SS confidence | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| Known secondary structure (DSSP) | T | T | ![]() | ![]() | ![]() | ![]() | S | T | T | T | T | ![]() | ![]() | ![]() | S | S | S | T | T | ![]() | ![]() | ![]() | S | S | S | T | T | ![]() |   | . | . | . | . | . | . | . | . | . | 150 | . | . | . | . | . | . | . | . | . | 160 | . | . | . | . | . | . | . | . | . | 170 | . | . | . | . | . | . | . | . | . | 180 | . | . | . | . | . | . | . | . | . | 190 | . | . | . | . | . | . | . | . | . | 200 | . | . | . | . | . | . | . | . | . | 210 |
| Sequence | L | R | V | S | G | N | N | L | T | S | L | P | A | L | P | S | G | L | Q | K | L | W | A | Y | N | N | R | L | T | S | L | P | E | M | S | P | G | L | Q | E | L | D | V | S | H | N | Q | L | T | R | L | P | Q | S | L | T | G | L | S | S | A | A | R | V | Y | L | D | G | N | P |
| Predicted secondary structure | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| SS confidence | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| Known secondary structure (DSSP) | ![]() | ![]() | S | S | T | T | ![]() | ![]() | ![]() | S | S | S | T | T | ![]() | ![]() | ![]() | S | S | S | G | G | G | G | G | T | T | ![]() | ![]() | ![]() | S |   | . | . | . | . | . | . | . | . | . | 220 | . | . | . | . | . | . | . | . | . | 230 | . | . | . | . | . | . | ||||||||||||
| Sequence | L | S | V | R | T | L | Q | A | L | R | D | I | I | G | H | S | G | I | R | I | H | F | D | M | A | G | ||||||||||||||||||||||||||||||||||||||||||||
| Predicted secondary structure | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| SS confidence | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| Known secondary structure (DSSP) | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() |
| Download: | PDB structure | FASTA sequence |
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