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 Protein Homology/analogY Recognition Engine V 2.0


 

Fold library entry viewer: c4nk8A_

Fold library idPDB HeaderMoleculeTitle
c4nk8A_PDB header: isomeraseChain: A: PDB Molecule: poly(beta-d-mannuronate) c5 epimerase;PDBTitle: crystal structure of the periplasmic alginate epimerase algg d317a2 mutant


Added to library: Sat Jan 18 08:24:42 2014
 
Links to external resources


 1........10.........20.........30.........40.........50.........60.........70
Sequence EMAKPVLPDLSGYTTEAALKKIARNKPGKITVARMMEETGLEFIGGDNKMAEWVVRQKGIPQAIMISDGY
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Known secondary structure (DSSP)









TT
STTS

SSB
GGG
TT


S
SGGG
TSS
S
 .........80.........90.........100.........110.........120.........130.........140
Sequence VNLQDLVKKVPKQFLSEVSPGVYVARLPILVKETGIFEIDSKTKELRLSQEGSFIVSEGKMLITNTSVNA
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Known secondary structure (DSSP) S
TTTTT
S

TT
TT
S




SS
SS
 .........150.........160.........170.........180.........190.........200.........210
Sequence WSETRNGLAAYRTPDEFRPFVLTWGGSQTWIATKMASMGYNQSSYGVSISQYTPNTAKVLKRGEPTGWII
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Known secondary structure (DSSP) TTTT




TTS




TT


S


S












 .........220.........230.........240.........250.........260.........270.........280
Sequence DSEFADMWYGFYCYETRDFVVGNTYRDNIVYGIAPHDRSHGLIIAENDVYGTKKHGIIISREVDNSFIFR
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Known secondary structure (DSSP) S
S
SS
BS
B


S
SSSS
BS
S






SS
BS

 .........290.........300.........310.........320.........330.........340.........350
Sequence NSHNNKLSGVVLDRNSVGNIVAYNEIYQNHTDGITLYESGNNLLWGNRVIANRRHGIRVRNSVNIKLYEN
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Known secondary structure (DSSP)

BS
SS
SSS

S
S


SS
SS

S
S


SS
SS

SS
 .........360.........370.........380.........390.........400.........410.......
Sequence VAMANGLMGVYGHIKDLNDTDRDIELDPFDAQVSLIMVGGELSSNGSGPLSIDSPLSVELYRVSMLM
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Known secondary structure (DSSP) S
SS



TTSS

TTTS





S
S
SS
S
SS



Download:PDB structure FASTA sequence

Hidden Markov model

Image coloured by rainbow N → C terminus
Interactive 3D view in JSmol


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Accessibility Statement
Please cite: The Phyre2 web portal for protein modeling, prediction and analysis
Kelley LA et al. Nature Protocols 10, 845-858 (2015) [paper] [Citation link]
 
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Michael Sternberg 
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