PHYRE Protein Fold Recognition Server

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Protein Homology/analogY Recognition Engine V 2.0

Fold library entry viewer: c4nj4A_

Fold library id	PDB Header	Molecule	Title
c4nj4A_	PDB header: oxidoreductase/oxidoreductase inhibitor	Chain: A: PDB Molecule: rna demethylase alkbh5;	PDBTitle: crystal structure of human alkbh5

Links to external resources
Added to library: Sat Jan 18 08:15:39 2014

1 . . . . . . . . 10 . . . . . . . . . 20 . . . . . . . . . 30 . . . . . . . . . 40 . . . . . . . . . 50 . . . . . . . . . 60 . . . . . . . . . 70

Sequence D Y E E Q Q L Q K E E E A R K V K S G I R Q M R L F S Q D E C A K I E A R I D E V V S R A E K G L Y N E H T V D R A P L R N K Y F F G E G Y

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
T T
T T
S
G G G T T S

. . . . . . . . . 80 . . . . . . . . . 90 . . . . . . . . . 100 . . . . . . . . . 110 . . . . . . . . . 120 . . . . . . . . . 130 . . . . . . . . . 140

Sequence T Y G A Q P G Q E R L Y P P G D V D E I P E W V H Q L V I Q K L V E H R V I P E G F V N S A V I N D Y Q P G G C I V S H V D P I H I F E R P

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
S
T T S S B
T T T S S
T T
T T
T T T B
S

. . . . . . . . . 150 . . . . . . . . . 160 . . . . . . . . . 170 . . . . . . . . . 180 . . . . . . . . . 190 . . . . . . . . . 200 . . . . . . . . . 210

Sequence I V S V S F F S D S A L C F G C K F Q F K P I R V S E P V L S L P V R R G S V T V L S G Y A A D E I T H C I R P Q D I K E R R A V I I L R K

Predicted secondary structure

SS confidence

Known secondary structure (DSSP) S S
G G G G S
T T T
S
T T
S S
G G G
S

. . . . . . . .

Sequence T R L D A P R L

Predicted secondary structure

SS confidence

Known secondary structure (DSSP) B
T T
B

Download: PDB structure FASTA sequence
Hidden Markov model

Image coloured by rainbow N → C terminus

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Please cite: The Phyre2 web portal for protein modeling, prediction and analysis

Kelley LA et al. Nature Protocols 10, 845-858 (2015) [paper] [Citation link]

© Structural Bioinformatics Group, Imperial College, London

Michael Sternberg

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	1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70
Sequence	D	Y	E	E	Q	Q	L	Q	K	E	E	E	A	R	K	V	K	S	G	I	R	Q	M	R	L	F	S	Q	D	E	C	A	K	I	E	A	R	I	D	E	V	V	S	R	A	E	K	G	L	Y	N	E	H	T	V	D	R	A	P	L	R	N	K	Y	F	F	G	E	G	Y
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)																		T	T																												T	T		S		G	G	G					T	T							S
	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140
Sequence	T	Y	G	A	Q	P	G	Q	E	R	L	Y	P	P	G	D	V	D	E	I	P	E	W	V	H	Q	L	V	I	Q	K	L	V	E	H	R	V	I	P	E	G	F	V	N	S	A	V	I	N	D	Y	Q	P	G	G	C	I	V	S	H	V	D	P	I	H	I	F	E	R	P
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)								S						T	T	S	S	B										T							T	T	S	S		T	T												T	T										T	T	T	B		S
	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210
Sequence	I	V	S	V	S	F	F	S	D	S	A	L	C	F	G	C	K	F	Q	F	K	P	I	R	V	S	E	P	V	L	S	L	P	V	R	R	G	S	V	T	V	L	S	G	Y	A	A	D	E	I	T	H	C	I	R	P	Q	D	I	K	E	R	R	A	V	I	I	L	R	K
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)							S	S									G	G	G	G	S		T	T	T				S							T	T												S	S						G	G	G			S
	.	.	.	.	.	.	.	.
Sequence	T	R	L	D	A	P	R	L
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)	B		T	T			B