PHYRE Protein Fold Recognition Server

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Protein Homology/analogY Recognition Engine V 2.0

Fold library entry viewer: c4nikB_

Fold library id	PDB Header	Molecule	Title
c4nikB_	PDB header: oncoprotein/immune system	Chain: B: PDB Molecule: single-chain fv fragment antibody;	PDBTitle: structure of human gankyrin in complex to the single chain antibody f5

Links to external resources
Added to library: Sat Sep 13 08:53:40 2014

1 . . . . . . . . 10 . . . . . . . . . 20 . . . . . . . . . 30 . . . . . . . . . 40 . . . . . . . . . 50 . . . . . . . . . 60 . . . . . . . . . 70

Sequence E V Q L V E S G G S L V K P G G S L R L S C A A S G F T F S N Y S M N W V R Q A P G K G L E W I S S I S G S S R Y I Y Y A D F V K G R F T I

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
T T
S S
G G G S
T T
T T S
T T T T T S

. . . . . . . . . 80 . . . . . . . . . 90 . . . . . . . . . 100 . . . . . . . . . 110 . . . . . . . . . 120 . . . . . . . . . 130 . . . . . . . . . 140

Sequence S R D N A T N S L Y L Q M N S L R A E D T A V Y Y C V R G V I D K F D Y W G R G T L V T V S A S Q S V L T Q P A S V S G S P G Q S I T I S C

Predicted secondary structure

SS confidence

Known secondary structure (DSSP) G G G T
S
G G G
T T
S B B
S
T T S

. . . . . . . . . 150 . . . . . . . . . 160 . . . . . . . . . 170 . . . . . . . . . 180 . . . . . . . . . 190 . . . . . . . . . 200 . . . . . . . . . 210

Sequence A G T S S D V G G Y N Y V S W Y Q Q H P G K A P K L M I Y E D S K R P S G V S N R F S G S K S G N T A S L T I S G L Q A E D E A D Y Y C I S

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
T T T S
T T S
T T S
B T T T B
T T S
T T T T S
S T T

. . . . . . . . . 220 . . . . . . . .

Sequence Y I S S N T R L F G G G T K L A V L

Predicted secondary structure

SS confidence

Known secondary structure (DSSP) T T B

Download: PDB structure FASTA sequence
Hidden Markov model

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Please cite: The Phyre2 web portal for protein modeling, prediction and analysis

Kelley LA et al. Nature Protocols 10, 845-858 (2015) [paper] [Citation link]

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Michael Sternberg

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	1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70
Sequence	E	V	Q	L	V	E	S	G	G	S	L	V	K	P	G	G	S	L	R	L	S	C	A	A	S	G	F	T	F	S	N	Y	S	M	N	W	V	R	Q	A	P	G	K	G	L	E	W	I	S	S	I	S	G	S	S	R	Y	I	Y	Y	A	D	F	V	K	G	R	F	T	I
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)														T	T											S	S		G	G	G	S									T	T											T	T	S							T	T	T	T	T	S
	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140
Sequence	S	R	D	N	A	T	N	S	L	Y	L	Q	M	N	S	L	R	A	E	D	T	A	V	Y	Y	C	V	R	G	V	I	D	K	F	D	Y	W	G	R	G	T	L	V	T	V	S	A	S	Q	S	V	L	T	Q	P	A	S	V	S	G	S	P	G	Q	S	I	T	I	S	C
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)				G	G	G	T								S			G	G	G											T	T																			S	B	B			S						T	T	S
	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210
Sequence	A	G	T	S	S	D	V	G	G	Y	N	Y	V	S	W	Y	Q	Q	H	P	G	K	A	P	K	L	M	I	Y	E	D	S	K	R	P	S	G	V	S	N	R	F	S	G	S	K	S	G	N	T	A	S	L	T	I	S	G	L	Q	A	E	D	E	A	D	Y	Y	C	I	S
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)				T	T	T	S		T	T	S									T	T	S							B	T	T	T	B			T	T	S		T	T							T	T								S			S	T	T
	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.
Sequence	Y	I	S	S	N	T	R	L	F	G	G	G	T	K	L	A	V	L
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)				T	T					B