PHYRE Protein Fold Recognition Server

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Protein Homology/analogY Recognition Engine V 2.0

Fold library entry viewer: c4nhfF_

Fold library id	PDB Header	Molecule	Title
c4nhfF_	PDB header: protein transport	Chain: F: PDB Molecule: trwg protein;	PDBTitle: crystal structure of the soluble domain of trwg type iv secretion2 machinery from bartonella grahamii

Links to external resources
Added to library: Sat Mar 8 08:33:03 2014

1 . . . . . . . . 10 . . . . . . . . . 20 . . . . . . . . . 30 . . . . . . . . . 40 . . . . . . . . . 50 . . . . . . . . . 60 . . . . . . . . . 70

Sequence E T S Y G E V V D R Y W L N Q Y V L N R E N Y D Y D T I Q L N Y D T T A L L S A A S V Q Q E Y Y K I Y D G E N A R D K V L S N K A R I T V K

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
B
G G G T B
T
S T T
T T T

. . . . . . . . . 80 . . . . . . . . . 90 . . . . . . . . . 100 . . . . . . . . . 110 . . . . . . . . . 120 . . . . . . . . . 130 . . . . . . . . . 140

Sequence V R S I Q L N G L G Q A T V R F T T Q Q L D S S G A T T G P K Q H Q I A T I G Y T Y V G A P M K S S D R L L N P L G F Q I T S Y R S D P E I

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
S T T
T T S
B
S
S S
T T

. . .

Sequence L L N

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)

Download: PDB structure FASTA sequence
Hidden Markov model

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Please cite: The Phyre2 web portal for protein modeling, prediction and analysis

Kelley LA et al. Nature Protocols 10, 845-858 (2015) [paper] [Citation link]

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Michael Sternberg

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	1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70
Sequence	E	T	S	Y	G	E	V	V	D	R	Y	W	L	N	Q	Y	V	L	N	R	E	N	Y	D	Y	D	T	I	Q	L	N	Y	D	T	T	A	L	L	S	A	A	S	V	Q	Q	E	Y	Y	K	I	Y	D	G	E	N	A	R	D	K	V	L	S	N	K	A	R	I	T	V	K
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)																							B		G	G	G											T	B												T		S	T	T							T	T	T
	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140
Sequence	V	R	S	I	Q	L	N	G	L	G	Q	A	T	V	R	F	T	T	Q	Q	L	D	S	S	G	A	T	T	G	P	K	Q	H	Q	I	A	T	I	G	Y	T	Y	V	G	A	P	M	K	S	S	D	R	L	L	N	P	L	G	F	Q	I	T	S	Y	R	S	D	P	E	I
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)								S	T	T													T	T	S		B		S																		S	S								T	T
	.	.	.
Sequence	L	L	N
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)