PHYRE Protein Fold Recognition Server

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Protein Homology/analogY Recognition Engine V 2.0

Fold library entry viewer: c4nf9A_

Fold library id	PDB Header	Molecule	Title
c4nf9A_	PDB header: cell cycle	Chain: A: PDB Molecule: protein casc5;	PDBTitle: structure of the knl1/nsl1 complex

Links to external resources
Added to library: Sat Mar 22 08:11:16 2014

1 . . . . . . . . 10 . . . . . . . . . 20 . . . . . . . . . 30 . . . . . . . . . 40 . . . . . . . . . 50 . . . . . . . . . 60 . . . . . . . . . 70

Sequence R T E E L L D Q L S L S E W D V V E W S D D Q A V F T F V Y D T I Q L T I T F E E S V V G F P F L D K R Y R K I V D V N F Q S L L D E D Q A

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
S
S S T T T T
S S
G G G S
G G G
B
T T T S

. . . . . . . . . 80 . . . . . . . . . 90 . . . . . . . . . 100 . . . . . . . . . 110 . . . . . . . . . 120 . . . . . . . . . 130 . . . . . . . . . 140

Sequence P P S S L L V H K L I F Q Y V E E K E S W K K T C T T Q H Q L P K X L E E F S L V V H H C R L L G E E I E Y L K R W G P N Y N L X N I D I N

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
T G G G T T T
B G G G G G G G T

. . . . . . . . . 150 . . . . . . . . . 160 . . . . . . . . . 170 . . . . . . . . . 180 . . . . . . . . . 190 . . . . . . . . . 200 . . . . . . . . . 210

Sequence N N E L R L L F S S S A A F A K F E I T L F L S A Y Y P S V P L P S T I Q N H V G N T S Q D D I A T I L S K V P L E N N Y L K N V V K Q I Y

Predicted secondary structure

SS confidence

Known secondary structure (DSSP) T T T T T T
T T T T T S
S
T T S
S S T T

. . . . . .

Sequence Q D L F Q D

Predicted secondary structure

SS confidence

Known secondary structure (DSSP) T T

Download: PDB structure FASTA sequence
Hidden Markov model

Image coloured by rainbow N → C terminus

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Please cite: The Phyre2 web portal for protein modeling, prediction and analysis

Kelley LA et al. Nature Protocols 10, 845-858 (2015) [paper] [Citation link]

© Structural Bioinformatics Group, Imperial College, London

Michael Sternberg

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	1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70
Sequence	R	T	E	E	L	L	D	Q	L	S	L	S	E	W	D	V	V	E	W	S	D	D	Q	A	V	F	T	F	V	Y	D	T	I	Q	L	T	I	T	F	E	E	S	V	V	G	F	P	F	L	D	K	R	Y	R	K	I	V	D	V	N	F	Q	S	L	L	D	E	D	Q	A
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)										S											S	S							T	T	T	T											S	S		G	G	G	S		G	G	G		B												T	T	T	S
	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140
Sequence	P	P	S	S	L	L	V	H	K	L	I	F	Q	Y	V	E	E	K	E	S	W	K	K	T	C	T	T	Q	H	Q	L	P	K	X	L	E	E	F	S	L	V	V	H	H	C	R	L	L	G	E	E	I	E	Y	L	K	R	W	G	P	N	Y	N	L	X	N	I	D	I	N
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)																		T	G	G	G	T	T	T			B	G	G	G																													G	G	G	G	T
	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210
Sequence	N	N	E	L	R	L	L	F	S	S	S	A	A	F	A	K	F	E	I	T	L	F	L	S	A	Y	Y	P	S	V	P	L	P	S	T	I	Q	N	H	V	G	N	T	S	Q	D	D	I	A	T	I	L	S	K	V	P	L	E	N	N	Y	L	K	N	V	V	K	Q	I	Y
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)	T	T									T	T	T	T											T	T	T	T	T	S											S												T	T	S		S	S	T	T
	.	.	.	.	.	.
Sequence	Q	D	L	F	Q	D
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)			T	T