PHYRE Protein Fold Recognition Server

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Protein Homology/analogY Recognition Engine V 2.0

Fold library entry viewer: c4nf0E_

Fold library id	PDB Header	Molecule	Title
c4nf0E_	PDB header: transport protein	Chain: E: PDB Molecule: probable c4-dicarboxylate-binding protein;	PDBTitle: crystal structure of a trap periplasmic solute binding protein from2 pseudomonas aeruginosa pao1 (pa4616), target efi-510182, with bound3 l-malate

Links to external resources
Added to library: Sat Nov 23 08:30:11 2013

1 . . . . . . . . 10 . . . . . . . . . 20 . . . . . . . . . 30 . . . . . . . . . 40 . . . . . . . . . 50 . . . . . . . . . 60 . . . . . . . . . 70

Sequence I K F S H V V S D D T P K G K G A L L F V E V Y P N S T L F G D A D E I E A L R A N K V Q M L A T S L T K Q L Q V F D L P F L F D D L E A L

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
S S
T T S
T T S S
T T S
S B
T T G G G G
T T S S S S

. . . . . . . . . 80 . . . . . . . . . 90 . . . . . . . . . 100 . . . . . . . . . 110 . . . . . . . . . 120 . . . . . . . . . 130 . . . . . . . . . 140

Sequence K R F Q K S M A K H G I Y G L A Y W N N G M K Q L S A T R E L H R P D D A K G L V F R I Q P S S V L E A Q F A M L G A T A K Q L S Y A E T L

Predicted secondary structure

SS confidence

Known secondary structure (DSSP) T
G G G G T
S S
S S G G G S T T
S
T T T
G G G

. . . . . . . . . 150 . . . . . . . . . 160 . . . . . . . . . 170 . . . . . . . . . 180 . . . . . . . . . 190 . . . . . . . . . 200 . . . . . . . . . 210

Sequence K A M Q A G S V Q G T E N T W S N L A G Q K I D S V Q P Y I T E T N H G A L S Y M L I T L E S I V D E V T L V V N K E A E A L N Q K E R E H

Predicted secondary structure

SS confidence

Known secondary structure (DSSP) T S
T T
G G G
S

. . . . . . . . . 220 . . . . . . . . . 230 . . .

Sequence L L A A G K S R L V S L S A E E H E A W R N A

Predicted secondary structure

SS confidence

Known secondary structure (DSSP) T S S S

Download: PDB structure FASTA sequence
Hidden Markov model

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Please cite: The Phyre2 web portal for protein modeling, prediction and analysis

Kelley LA et al. Nature Protocols 10, 845-858 (2015) [paper] [Citation link]

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Michael Sternberg

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	1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70
Sequence	I	K	F	S	H	V	V	S	D	D	T	P	K	G	K	G	A	L	L	F	V	E	V	Y	P	N	S	T	L	F	G	D	A	D	E	I	E	A	L	R	A	N	K	V	Q	M	L	A	T	S	L	T	K	Q	L	Q	V	F	D	L	P	F	L	F	D	D	L	E	A	L
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)						S	S		T	T	S															T	T	S	S												T	T	S		S	B								T	T	G	G	G	G		T	T	S	S	S	S
	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140
Sequence	K	R	F	Q	K	S	M	A	K	H	G	I	Y	G	L	A	Y	W	N	N	G	M	K	Q	L	S	A	T	R	E	L	H	R	P	D	D	A	K	G	L	V	F	R	I	Q	P	S	S	V	L	E	A	Q	F	A	M	L	G	A	T	A	K	Q	L	S	Y	A	E	T	L
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)				T			G	G	G	G	T																	S	S			S	S	G	G	G	S	T	T							S										T	T	T								G	G	G
	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210
Sequence	K	A	M	Q	A	G	S	V	Q	G	T	E	N	T	W	S	N	L	A	G	Q	K	I	D	S	V	Q	P	Y	I	T	E	T	N	H	G	A	L	S	Y	M	L	I	T	L	E	S	I	V	D	E	V	T	L	V	V	N	K	E	A	E	A	L	N	Q	K	E	R	E	H
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)						T	S														T	T		G	G	G										S
	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.
Sequence	L	L	A	A	G	K	S	R	L	V	S	L	S	A	E	E	H	E	A	W	R	N	A
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)				T	S	S	S