PHYRE Protein Fold Recognition Server

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Protein Homology/analogY Recognition Engine V 2.0

Fold library entry viewer: c4nekD_

Fold library id	PDB Header	Molecule	Title
c4nekD_	PDB header: isomerase	Chain: D: PDB Molecule: enoyl-coa hydratase/carnithine racemase;	PDBTitle: putative enoyl-coa hydratase/carnithine racemase from magnetospirillum2 magneticum amb-1

Links to external resources
Added to library: Sat Nov 30 09:03:06 2013

1 . . . . . . . . 10 . . . . . . . . . 20 . . . . . . . . . 30 . . . . . . . . . 40 . . . . . . . . . 50 . . . . . . . . . 60 . . . . . . . . . 70

Sequence S E L V L S H V E G G V Q V V R X N R P D K K N A L I G E X Y A A L A E A F A K G E A D D D V N V F L I L G S Q T D F S A G N D L P D F L T

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
S T T
G G G T T
B
T T
S S
S B
B
T T

. . . . . . . . . 80 . . . . . . . . . 90 . . . . . . . . . 100 . . . . . . . . . 110 . . . . . . . . . 120 . . . . . . . . . 130 . . . . . . . . . 140

Sequence W E A L S G S V A D R F I R A V A G A R K P V V A A V R G A A I G I G S T L L P H C D L V Y A A P G T R F H X P F I N L G I V P E A G S S Q

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
S
S T T S T
S S
S T T G G G
S
T T
G G G G T
T T

. . . . . . . . . 150 . . . . . . . . . 160 . . . . . . . . . 170 . . . . . . . . . 180 . . . . . . . . . 190 . . . . . . . . . 200 . . . . . . . . . 210

Sequence T X P A L A G H R R A A E X L X L G E P F G V D T A E A V G L I N G V V P G E D L E E T A X A A A R K L A A K P R S I L V Q I K A L X K T P

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
T S
B
T T S
S
T S
T S

. . . . . . . . . 220 . . . . . . . . . 230 . . . . . . . . . 240 . . . . . . . . . 250 .

Sequence A E P I X D R L T R E A A V F D T C L K G E A L N E A V S A F K E K R A P D F S K

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
T S T T S
T T

Download: PDB structure FASTA sequence
Hidden Markov model

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Please cite: The Phyre2 web portal for protein modeling, prediction and analysis

Kelley LA et al. Nature Protocols 10, 845-858 (2015) [paper] [Citation link]

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Michael Sternberg

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	1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70
Sequence	S	E	L	V	L	S	H	V	E	G	G	V	Q	V	V	R	X	N	R	P	D	K	K	N	A	L	I	G	E	X	Y	A	A	L	A	E	A	F	A	K	G	E	A	D	D	D	V	N	V	F	L	I	L	G	S	Q	T	D	F	S	A	G	N	D	L	P	D	F	L	T
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)			S							T	T									G	G	G	T	T		B																			T	T										S	S		S	B			B						T	T
	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140
Sequence	W	E	A	L	S	G	S	V	A	D	R	F	I	R	A	V	A	G	A	R	K	P	V	V	A	A	V	R	G	A	A	I	G	I	G	S	T	L	L	P	H	C	D	L	V	Y	A	A	P	G	T	R	F	H	X	P	F	I	N	L	G	I	V	P	E	A	G	S	S	Q
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)		S		S	T	T	S											T		S	S								S				T					T	G	G	G		S						T	T							G	G	G	G	T					T	T
	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210
Sequence	T	X	P	A	L	A	G	H	R	R	A	A	E	X	L	X	L	G	E	P	F	G	V	D	T	A	E	A	V	G	L	I	N	G	V	V	P	G	E	D	L	E	E	T	A	X	A	A	A	R	K	L	A	A	K	P	R	S	I	L	V	Q	I	K	A	L	X	K	T	P
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)																T	S				B								T	T	S		S																					T	S													T	S
	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.
Sequence	A	E	P	I	X	D	R	L	T	R	E	A	A	V	F	D	T	C	L	K	G	E	A	L	N	E	A	V	S	A	F	K	E	K	R	A	P	D	F	S	K
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)																				T	S												T	T	S				T	T