PHYRE Protein Fold Recognition Server

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Protein Homology/analogY Recognition Engine V 2.0

Fold library entry viewer: c4nbwA_

Fold library id	PDB Header	Molecule	Title
c4nbwA_	PDB header: oxidoreductase	Chain: A: PDB Molecule: short-chain dehydrogenase/reductase sdr;	PDBTitle: crystal structure of fabg from plesiocystis pacifica

Links to external resources
Added to library: Sat Dec 7 08:59:15 2013

1 . . . . . . . . 10 . . . . . . . . . 20 . . . . . . . . . 30 . . . . . . . . . 40 . . . . . . . . . 50 . . . . . . . . . 60 . . . . . . . . . 70

Sequence K R V A I I T G A A N G I G R A T A L E F A Q A G Y H V V A W D L A E E A G A A L I A E I A D A G G S A D F A R V D V S A A E S V E A A V A

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
T T T S T T
S
T T
T T

. . . . . . . . . 80 . . . . . . . . . 90 . . . . . . . . . 100 . . . . . . . . . 110 . . . . . . . . . 120 . . . . . . . . . 130 . . . . . . . . . 140

Sequence E I I A E H G R V D V L V N N A G I L H D G Q L V K V K G G E V V K K M A E A Q F D A V I S V N L K G V F L C T Q A V A P H M I A A K Y G R

Predicted secondary structure

SS confidence

Known secondary structure (DSSP) S
B
S T T
T T

. . . . . . . . . 150 . . . . . . . . . 160 . . . . . . . . . 170 . . . . . . . . . 180 . . . . . . . . . 190 . . . . . . . . . 200 . . . . . . . . . 210

Sequence I L N A S S V V G L Y G N F G Q T N Y V A A K S G V I G M T K V W A R E L G R Y G I T V N A I A P G F I A T E M V Q Q M P E R V L E A M V A

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
T
T T B G G G T
S B
T S

. . . . . . . . . 220 . . . . . . . . . 230 . . . . . . . . . 240 . . . . . . . . . 250 . . .

Sequence R T P V G R I G D P V D I A R A Y L F L A S E E S G F I S G T T L S V D G G M V V G S

Predicted secondary structure

SS confidence

Known secondary structure (DSSP) T
T T S S
B
S G G G T T
S
S T T

Download: PDB structure FASTA sequence
Hidden Markov model

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Please cite: The Phyre2 web portal for protein modeling, prediction and analysis

Kelley LA et al. Nature Protocols 10, 845-858 (2015) [paper] [Citation link]

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Michael Sternberg

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	1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70
Sequence	K	R	V	A	I	I	T	G	A	A	N	G	I	G	R	A	T	A	L	E	F	A	Q	A	G	Y	H	V	V	A	W	D	L	A	E	E	A	G	A	A	L	I	A	E	I	A	D	A	G	G	S	A	D	F	A	R	V	D	V	S	A	A	E	S	V	E	A	A	V	A
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)								T	T	T	S													T	T								S															T	T										T	T
	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140
Sequence	E	I	I	A	E	H	G	R	V	D	V	L	V	N	N	A	G	I	L	H	D	G	Q	L	V	K	V	K	G	G	E	V	V	K	K	M	A	E	A	Q	F	D	A	V	I	S	V	N	L	K	G	V	F	L	C	T	Q	A	V	A	P	H	M	I	A	A	K	Y	G	R
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)							S															B		S					T	T																			T																		T
	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210
Sequence	I	L	N	A	S	S	V	V	G	L	Y	G	N	F	G	Q	T	N	Y	V	A	A	K	S	G	V	I	G	M	T	K	V	W	A	R	E	L	G	R	Y	G	I	T	V	N	A	I	A	P	G	F	I	A	T	E	M	V	Q	Q	M	P	E	R	V	L	E	A	M	V	A
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)							T							T	T	B																						G	G	G	T										S	B							T	S
	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.
Sequence	R	T	P	V	G	R	I	G	D	P	V	D	I	A	R	A	Y	L	F	L	A	S	E	E	S	G	F	I	S	G	T	T	L	S	V	D	G	G	M	V	V	G	S
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)	T		T	T	S	S		B														S	G	G	G	T	T			S						S	T	T