PHYRE Protein Fold Recognition Server

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Protein Homology/analogY Recognition Engine V 2.2

Fold library entry viewer: c4nb5D_

Fold library id	PDB Header	Molecule	Title
c4nb5D_	PDB header: dna binding protein	Chain: D: PDB Molecule: dna binding protein;	PDBTitle: crystal structure of a transcriptional regulator

Links to external resources
Added to library: Sat Apr 26 08:21:32 2014

1 . . . . . . . . 10 . . . . . . . . . 20 . . . . . . . . . 30 . . . . . . . . . 40 . . . . . . . . . 50 . . . . . . . . . 60 . . . . . . . . . 70

Sequence P D I M E F V E Q M G G Y F E S R S L T R L A G R L L G W L L V C D P E R Q S S E E L A T A L A A S S G G I S T N A R M L I Q F G F I E R L

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
T T T S
S S S
T
T S

. . . . . . . . . 80 . . . . . . . . . 90 . . . . . . . . . 100 . . . . . . . . . 110 . . . . . . . . . 120 . . . . . . . . . 130 . . . . . . . . . 140

Sequence A V A G D R R T Y F R L R P N A F A A G E R E R I R A M A E L Q D L A D V G L R A L G D A P P Q R S R R L R E M R D L L A Y M E N V V S D A

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
T T
S
T T T T T S
G G G G

. . . . . .

Sequence L G R Y S Q

Predicted secondary structure

SS confidence

Known secondary structure (DSSP) T

Download: PDB structure FASTA sequence
Hidden Markov model

Image coloured by rainbow N → C terminus

Interactive 3D view in JSmol

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Accessibility Statement

Please cite: Phyre2.2: A Community Resource for Template-based Protein Structure Prediction

Powell HR et al. Journal of Molecular Biology (2025) in press DOI: https://doi.org/10.1016/j.jmb.2025.168960

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Michael Sternberg

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	1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70
Sequence	P	D	I	M	E	F	V	E	Q	M	G	G	Y	F	E	S	R	S	L	T	R	L	A	G	R	L	L	G	W	L	L	V	C	D	P	E	R	Q	S	S	E	E	L	A	T	A	L	A	A	S	S	G	G	I	S	T	N	A	R	M	L	I	Q	F	G	F	I	E	R	L
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)																T	T	T	S															S	S	S												T																	T	S
	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140
Sequence	A	V	A	G	D	R	R	T	Y	F	R	L	R	P	N	A	F	A	A	G	E	R	E	R	I	R	A	M	A	E	L	Q	D	L	A	D	V	G	L	R	A	L	G	D	A	P	P	Q	R	S	R	R	L	R	E	M	R	D	L	L	A	Y	M	E	N	V	V	S	D	A
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)			T	T			S							T	T																											T	T	T	S		G	G	G	G
	.	.	.	.	.	.
Sequence	L	G	R	Y	S	Q
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)					T