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 Protein Homology/analogY Recognition Engine V 2.0


 

Fold library entry viewer: c4napD_

Fold library idPDB HeaderMoleculeTitle
c4napD_PDB header: transport proteinChain: D: PDB Molecule: extracellular solute-binding protein, family 7;PDBTitle: crystal structure of a trap periplasmic solute binding protein from2 desulfovibrio alaskensis g20 (dde_0634), target efi-510102, with3 bound d-tryptophan


Added to library: Sat Nov 16 08:52:21 2013
 
Links to external resources


 1........10.........20.........30.........40.........50.........60.........70
Sequence PVTLNYANFPPASTFPCIQXEQWAHEVRTRTRGKVDVLTYPGGTLLGARNXLRGVXSGQADIGCISLAYH
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Known secondary structure (DSSP)



S
TTSTTTSSGGGSS

TTTTTS
SGGGS
 .........80.........90.........100.........110.........120.........130.........140
Sequence PGVFPVXSVFELPLGFTSAEAASSVLWELYSGLRPAELERVKVLTXFTSAPSHFXTVTPVRSLRDLQGXE
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Known secondary structure (DSSP) TTT
TTGGGGGS







GGGTTS


SS


STT
 .........150.........160.........170.........180.........190.........200.........210
Sequence IRGAGTLSAILEKLGATPVSXPXPEVPEAVQKGIIKGLFTSLDVXKDXNFAEXTGHVTRADQAVYPFAVI
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Known secondary structure (DSSP)
TTT


GGGTS
S
TT
GGGT




 .........220.........230.........240.........250.........260.........270.........280
Sequence XNREAWERLSPDVQQVLDGLAAEHAAWTGRYLDAHVQDSXRWAEEKHGVQVHTLPEEDIAAXRRSVQPLF
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Known secondary structure (DSSP)
TS
S




TT
 .........290.........300.........310
Sequence DAWAQRAADKGADPDAVXRTVDALKAQYGG
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Known secondary structure (DSSP) TT

TT


Download:PDB structure FASTA sequence

Hidden Markov model

Image coloured by rainbow N → C terminus
Interactive 3D view in JSmol


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Accessibility Statement
Please cite: The Phyre2 web portal for protein modeling, prediction and analysis
Kelley LA et al. Nature Protocols 10, 845-858 (2015) [paper] [Citation link]
 
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Michael Sternberg 
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