PHYRE Protein Fold Recognition Server

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Protein Homology/analogY Recognition Engine V 2.0

Fold library entry viewer: c4n8yA_

Fold library id	PDB Header	Molecule	Title
c4n8yA_	PDB header: transport protein	Chain: A: PDB Molecule: putative trap-type c4-dicarboxylate transport system,	PDBTitle: crystal structure of a trap periplasmic solute binding protein from2 bradyrhizobium sp. btai1 b (bbta_0128), target efi-5100563 (bbta_0128), complex with alpha/beta-d-galacturonate

Links to external resources
Added to library: Sat Nov 23 09:00:11 2013

1 . . . . . . . . 10 . . . . . . . . . 20 . . . . . . . . . 30 . . . . . . . . . 40 . . . . . . . . . 50 . . . . . . . . . 60 . . . . . . . . . 70

Sequence R D F R S A D V H P A D Y P T V E A V K F M G K Q L A A A S G G K L G V K V F P N G A L G S E K D T I E Q L K I G A L D M M R I N S S P L N

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
S S
T T S T T T S
T T T T
T S
S S G G G T

. . . . . . . . . 80 . . . . . . . . . 90 . . . . . . . . . 100 . . . . . . . . . 110 . . . . . . . . . 120 . . . . . . . . . 130 . . . . . . . . . 140

Sequence N F V P E T V A L C L P F V F R D T Q H M R N V L D G P I G D E I L A A M E P A G L V G L A Y Y D S G A R S I Y T V K A P V K S L A D L K G

Predicted secondary structure

SS confidence

Known secondary structure (DSSP) T T
G G G S T T
S S S S T T G G G T
S S S
S G G G G T T

. . . . . . . . . 150 . . . . . . . . . 160 . . . . . . . . . 170 . . . . . . . . . 180 . . . . . . . . . 190 . . . . . . . . . 200 . . . . . . . . . 210

Sequence L K I R V Q Q S D L W V G M I Q S L G A N P T P M P Y G E V Y T A L K T G L V D A A E N N W P S Y E S S R H F E A A K F Y N I T E H S L A P

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
S
T T
G G G T S
S
T S G G G T

. . . . . . . . . 220 . . . . . . . . . 230 . . . . . . . . . 240 . . . . . . . . . 250 . . . . . . . . . 260 . . . . . . . . . 270 . . . . . . . . . 280

Sequence E V L V M S K K V W D T L S K E D Q A L V R K A A K D S V P V M R K L W D E R E Q A S R K A V E A A G V Q V V T V A N K Q E F V D A M K P V

Predicted secondary structure

SS confidence

Known secondary structure (DSSP) T T S
T T
S
T T

. . . . . . . . . 290 . . . . . . . . . 300

Sequence Y Q K F A G D E K L S S L V K R I Q D T

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
S T

Download: PDB structure FASTA sequence
Hidden Markov model

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Please cite: The Phyre2 web portal for protein modeling, prediction and analysis

Kelley LA et al. Nature Protocols 10, 845-858 (2015) [paper] [Citation link]

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Michael Sternberg

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	1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70
Sequence	R	D	F	R	S	A	D	V	H	P	A	D	Y	P	T	V	E	A	V	K	F	M	G	K	Q	L	A	A	A	S	G	G	K	L	G	V	K	V	F	P	N	G	A	L	G	S	E	K	D	T	I	E	Q	L	K	I	G	A	L	D	M	M	R	I	N	S	S	P	L	N
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)								S	S		T	T	S																	T	T	T	S								T	T	T	T													T	S		S						S	G	G	G	T
	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140
Sequence	N	F	V	P	E	T	V	A	L	C	L	P	F	V	F	R	D	T	Q	H	M	R	N	V	L	D	G	P	I	G	D	E	I	L	A	A	M	E	P	A	G	L	V	G	L	A	Y	Y	D	S	G	A	R	S	I	Y	T	V	K	A	P	V	K	S	L	A	D	L	K	G
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)	T	T		G	G	G					S	T	T		S	S	S										S									T	T	G	G	G	T																	S	S	S				S	G	G	G	G	T	T
	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210
Sequence	L	K	I	R	V	Q	Q	S	D	L	W	V	G	M	I	Q	S	L	G	A	N	P	T	P	M	P	Y	G	E	V	Y	T	A	L	K	T	G	L	V	D	A	A	E	N	N	W	P	S	Y	E	S	S	R	H	F	E	A	A	K	F	Y	N	I	T	E	H	S	L	A	P
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)							S											T	T								G	G	G								T	S		S												T	S	G	G	G	T
	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280
Sequence	E	V	L	V	M	S	K	K	V	W	D	T	L	S	K	E	D	Q	A	L	V	R	K	A	A	K	D	S	V	P	V	M	R	K	L	W	D	E	R	E	Q	A	S	R	K	A	V	E	A	A	G	V	Q	V	V	T	V	A	N	K	Q	E	F	V	D	A	M	K	P	V
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)											T	T	S																																					T	T							S		T								T
	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300
Sequence	Y	Q	K	F	A	G	D	E	K	L	S	S	L	V	K	R	I	Q	D	T
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)							S												T