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 Protein Homology/analogY Recognition Engine V 2.0


 

Fold library entry viewer: c4n6dA_

Fold library idPDB HeaderMoleculeTitle
c4n6dA_PDB header: transport proteinChain: A: PDB Molecule: trap dicarboxylate transporter-dctp subunit;PDBTitle: crystal structure of a trap periplasmic solute binding protein from2 desulfovibrio salexigens dsm2638 (desal_3247), target efi-510112,3 phased with i3c, open complex, c-terminus of symmetry mate bound in4 ligand binding site


Added to library: Sat Nov 2 08:35:15 2013
 
Links to external resources


 1........10.........20.........30.........40.........50.........60.........70
Sequence ADISLSYANFPPAKTFPCVQMERWKQEVEKRTAGKVQVQTYPGSTLLGAKNTLRGVMQGQADIGCVSLAY
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Known secondary structure (DSSP)



S
TTSTTTS
TTSS

TTTTSSSGGG
 .........80.........90.........100.........110.........120.........130.........140
Sequence HPGVFPLSSVFELPLGFTSSTSASLALWDLYTKYQPKEFKRFKVLTMFASAPSNIMTKVPVRNLDDLKGL
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Known secondary structure (DSSP) STTT
TTGGGGGS







GGGTT



SS


SGGGGTT
 .........150.........160.........170.........180.........190.........200.........210
Sequence EVRASGILSKILESLGATPVSMPMSATPEALQKGVVKGLFSSFEVLKDLNFAEICRYETETNTAVYPFAI
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Known secondary structure (DSSP)

TT



GGGTS
S
TTT
GGGT








 .........220.........230.........240.........250.........260.........270.........280
Sequence IMNMNSWNSLPDDVKKVLNDLGREQAEWTGKYMDEHVKRSLAWAKDKYSIEMIKMSDADMQAIKDKTLPL
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Known secondary structure (DSSP) TS





 .........290.........300.........310.........
Sequence IEDWKEKAAAKGVDGAAVLSDVEELRIKYEGKAENLYFQ
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Known secondary structure (DSSP) TT



S

GGG


Download:PDB structure FASTA sequence

Hidden Markov model

Image coloured by rainbow N → C terminus
Interactive 3D view in JSmol


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Accessibility Statement
Please cite: The Phyre2 web portal for protein modeling, prediction and analysis
Kelley LA et al. Nature Protocols 10, 845-858 (2015) [paper] [Citation link]
 
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Michael Sternberg 
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