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 Protein Homology/analogY Recognition Engine V 2.0


 

Fold library entry viewer: c4n5cH_

Fold library idPDB HeaderMoleculeTitle
c4n5cH_PDB header: protein bindingChain: H: PDB Molecule: cargo-transport protein ypp1;PDBTitle: crystal structure of ypp1


Added to library: Sat Jan 25 08:28:14 2014
 
Links to external resources


 1........10.........20.........30.........40.........50.........60.........70
Sequence SKIIDVVDQALRARLLGGSTFNSGFDSLDSVLNLQFRLHYHVIGSNGPAKPVCDVLLKESQNLEKNXSXN
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Known secondary structure (DSSP)
TTTT
S



S
SS




 .........80.........90.........100.........110.........120.........130.........140
Sequence DYPEITKLVEKILFNCLGILFFHRGQFQESQRCLLHSLKIHNKTALXEQYDRYLIVENLYYRGLVSQDIN
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Known secondary structure (DSSP)
ST



S
S
 .........150.........160.........170.........180.........190.........200.........210
Sequence IXQNVFYKELLAHVDTIPPESNGLLFEYISLIVAKLRFNQIQDLAENFKTTVENPFILFLYXIKKFQSPL
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Known secondary structure (DSSP)

S


TT




ST

TT

TT
 .........220.........230.........240.........250.........260.........270.........280
Sequence KKHIDNDDLYLKFGQNVLLKAKFPTASETNDEALEHFNVFLQYYFKFTHIKKIKVNPSWYNFIISSXEKT
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Known secondary structure (DSSP) S









TTS


S




TTS
 .........290.........300.........310.........320.........330.........340.........350
Sequence FQSIEVSKTAXFLFQNLSDNSNDEIKKKTFKRESILNFVNFVKYNDKYYQLHDNSHRDIISFIDAYSFIL
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Known secondary structure (DSSP) SS


SS
SS
S
 .........360.........370.........380.........390.........400.........410.........420
Sequence QNSSKTDSIENVFDYDNTVSTFATSLNSFYKEYNLPLXSQSESLDWLENSTRCVYPGNISKVLTNAWSTL
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Known secondary structure (DSSP) S

GGG
BTTTB
TT




TTGGG







 .........430.........440.........450.........460.........470.........480.........490
Sequence YEIRKYQLDFLVSNNLTSYLCNAXXLSGEEEKALRELQFKYSYTLAQQRHIETAIKTLESLILSKNPNYY
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Known secondary structure (DSSP) GGG
TT


TT
TT
TT
 .........500.........510.........520.........530.........540.........550.........560
Sequence KAWHLLALCRSVQEDKEXSYKIVCSVLEAXNESLQNNTLLLNDRWQFIHLKLTQLALIEEIFGTLEALET
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Known secondary structure (DSSP) SS

TS


STT
T
 .........570.........580.........590.........600.........610.........620.........630
Sequence LPEVFELYATLFPXGPKYSQTKEYLLQXVWIFAANXYXRTKDNDEDAKAAIKEASNVESKFKNLNCNIAN
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Known secondary structure (DSSP) T



SSGGGSSSS
T


SS

S
 .........640.........650.........660.........670.........680.........690.........700
Sequence GYLSIPGVALKEFETVLYYDENNLDALVGFAELIFNDTDRSAAYARLKFLLECAILESIEAYYSPEVWWY
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Known secondary structure (DSSP)


SSTT



T
 .........710.........720.........730....
Sequence LSLIYEKDEYKNSLLKCIKYQELNPIRSLRYCNY
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Known secondary structure (DSSP) TT


S

SS
GGGG


Download:PDB structure FASTA sequence

Hidden Markov model

Image coloured by rainbow N → C terminus
Interactive 3D view in JSmol


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Accessibility Statement
Please cite: The Phyre2 web portal for protein modeling, prediction and analysis
Kelley LA et al. Nature Protocols 10, 845-858 (2015) [paper] [Citation link]
 
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