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 Protein Homology/analogY Recognition Engine V 2.0


 

Fold library entry viewer: c4n01B_

Fold library idPDB HeaderMoleculeTitle
c4n01B_PDB header: transport proteinChain: B: PDB Molecule: periplasmic binding protein;PDBTitle: the crystal structure of a periplasmic binding protein from2 veillonella parvula dsm 2008


Added to library: Sat Jan 11 09:40:02 2014
 
Links to external resources


 1........10.........20.........30.........40.........50.........60.........70
Sequence GTSVTWSETFDGTKTDFAVKSAPTHAVSXSQATTEXXLQLGLDDKXAGTAFKEEEIYPPLQAAYDKVKVL
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Known secondary structure (DSSP)


TTSS

SS
STTGGGG


S


GGGTTS
 .........80.........90.........100.........110.........120.........130.........140
Sequence SDKWPSYEVFXSVKPDFATGWPDSFSKRAIPADKXISQKVNIWIPESXLSTKADLETNFSDXIKLGEIFG
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Known secondary structure (DSSP) SS


T

S

GGGGSTTS

TT


GGGT
TT

TT
 .........150.........160.........170.........180.........190.........200.........210
Sequence VKPKAEEWVADQRKTLAAIQNKLKDLPRKRVFIYDSEDGQPFTAFEGYTTNILKLIGADNVXSGLGVDKT
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Known secondary structure (DSSP)
TTS


SSS
SSGGGTTTTTSS


S
 .........220.........230.........240.........250.........260.........270.........280
Sequence WAKGSWETVIAQNPDYIIIADYGNSIRNDDDFQQKIEKIKANPQLQDITAVKEGHFIRVKLSEITPGVRT
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Known secondary structure (DSSP)



S


S
TT

T
GGGTTST

GGGSSSSS
 .........290......
Sequence VDALKRLAEEIHGIKV
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Known secondary structure (DSSP)




Download:PDB structure FASTA sequence

Hidden Markov model

Image coloured by rainbow N → C terminus
Interactive 3D view in JSmol


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Accessibility Statement
Please cite: The Phyre2 web portal for protein modeling, prediction and analysis
Kelley LA et al. Nature Protocols 10, 845-858 (2015) [paper] [Citation link]
 
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Michael Sternberg 
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