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 Protein Homology/analogY Recognition Engine V 2.0


 

Fold library entry viewer: c4mtkD_

Fold library idPDB HeaderMoleculeTitle
c4mtkD_PDB header: toxinChain: D: PDB Molecule: vgrg1;PDBTitle: crystal structure of pa0091 vgrg1, the central spike of the type vi2 secretion system


Added to library: Sat Oct 4 08:23:33 2014
 
Links to external resources


 1........10.........20.........30.........40.........50.........60.........70
Sequence RLVQVDCPLGPDVLLLQRMEGREELGRLFAYELHLVSENPNLPLEQLLGKPMSLSLELPGGSRRFFHGIV
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Known secondary structure (DSSP)

BTTBSSS
TTS

S
TT

GGGTTTS
TTS
 .........80.........90.........100.........110.........120.........130.........140
Sequence ARCSQVAGHGQFAGYQATLRPWPWLLTRTSDCRIFQNQSVPEIIKQVFRNLGFSDFEDALTRPYREWEYC
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Known secondary structure (DSSP)


SS

GGGGGGG
TT





S


 .........150.........160.........170.........180.........190.........200.........210
Sequence VQYRETSFDFISRLMEQEGIYYWFRHEQKRHILVLSDAYGAHRSPGGYASVPYYPPTLGHRERDHFFDWQ
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Known secondary structure (DSSP) T

SS

SGGG



TT
SB

GGGS

SS

 .........220.........230.........240.........250.........260.........270.........280
Sequence MAREVQPGSLTLNDYDFQRPGARLEVRSNIARPHAAADYPLYDYPGEYVQSQDGEQYARNRIEAIQAQHE
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Known secondary structure (DSSP)



S



TTSTT






SSTT


S

S
SSTTS
 .........290.........300.........310.........320.........330.........340.........350
Sequence RVRLRGVVRGIGAGHLFRLSGYPRDDQNREYLVVGAEYRVVQELSQFESELDCIDASQSFRLLPQTPVPV
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Known secondary structure (DSSP)

SS

TT
S
SSGGGSS



TTS




S
S



 .........360.........370.........380.........390.........400.........410.........420
Sequence VRGPQTAVVVGPKGEEIWTDQYGRVKVHFHWDRHDQSNENSSCWIRVSQAWAGKNWGSMQIPRIGQEVIV
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Known secondary structure (DSSP)

S


SS
S



TT

BSS

S

SSTTSS

B
B

S
B
SS
B





TT
 .........430.........440.........450.........460.........470.........480.........490
Sequence SFLEGDPDRPIITGRVYNAEQTVPYELPANATQSGMKSRSSKGGTPANFNEIRMEDKKGAEQLYIHAERN
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Known secondary structure (DSSP) GGG
TTS


SSS

SS
TTTTTT


TTT

TT




TT


SS
 .........500.........510.........520.........530.........540.........550.........560
Sequence QDNLVENDASLSVGHDRNKSIGHDELARIGNNRTRAVKLNDTLLVGGAKSDSVTGTYLIEAGAQIRLVCG
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Known secondary structure (DSSP)




SS





SS





SS





SS





SS





SS





SS





SST
 .........570.........580.........590.........600.........610.........620.......
Sequence KSVVEFNADGTINISGSAFNLYASGNGNIDTGGRLDLNSGGASEVDAKGKGVQGTIDGQVQAMFPPP
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Known secondary structure (DSSP) TTTS

S





SS





SS


SSSS






TT
S
S



Download:PDB structure FASTA sequence

Hidden Markov model

Image coloured by rainbow N → C terminus
Interactive 3D view in JSmol


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Accessibility Statement
Please cite: The Phyre2 web portal for protein modeling, prediction and analysis
Kelley LA et al. Nature Protocols 10, 845-858 (2015) [paper] [Citation link]
 
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