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 Protein Homology/analogY Recognition Engine V 2.0


 

Fold library entry viewer: c4mt1A_

Fold library idPDB HeaderMoleculeTitle
c4mt1A_PDB header: membrane protein, tranport proteinChain: A: PDB Molecule: drug efflux protein;PDBTitle: crystal structure of the neisseria gonorrhoeae mtrd inner membrane2 multidrug efflux pump


Added to library: Sat Aug 9 10:09:01 2014
 
Links to external resources


 1........10.........20.........30.........40.........50.........60.........70
Sequence AKFFIDRPIFAWVISIFIIAAGIFGIKSLPVSQYPSVAAPTITLHAIYPGASAQVMEGSVLSVIERNMNG
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Known secondary structure (DSSP)

S


S

S
S


TT

TTTSSS
 .........80.........90.........100.........110.........120.........130.........140
Sequence VEGLDYMSTSADSSGSGSVSLTFTPDTDENLAQVEVQNKLSEVLSTLPATVQQYGVTVSKARSNFLMIVM
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Known secondary structure (DSSP) STTTTS
SS

TTTTTS







 .........150.........160.........170.........180.........190.........200.........210
Sequence LSSDVQSTEEMNDYAQRNVVPELQRIEGVGQVRLFGAQRAMRIWVDPKKLQNYNLSFADVGSALSAQNIQ
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Known secondary structure (DSSP) SSS
TTTTTTTSSSSS


TT

S

 .........220.........230.........240.........250.........260.........270.........280
Sequence ISAGSIGSLPAVRGQTVTATVTAQGQLGTAEEFGNVILRANTDGSNIYLKDVAKVGLGMEDYSSSTRLNG
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Known secondary structure (DSSP)


T
SS

TT










ST

TTS
S



TT
 .........290.........300.........310.........320.........330.........340.........350
Sequence VNTTGMAVMLSNSGNAMATAKAVKERLAVLEKYFPQGMSWKTPYDTSKFVEISIEKVIHTLIEAMVLVFV
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Known secondary structure (DSSP)

TT

SGGGS
SS


BS
 .........360.........370.........380.........390.........400.........410.........420
Sequence VMYLFLQNIRYTLIPTIVVPISLLGGFAFISYMGMSINVLTMFAMILVIGIVVDDAIVVVENVERIMAGE
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Known secondary structure (DSSP)
STTT



TTTT
 .........430.........440.........450.........460.........470.........480.........490
Sequence GLPPKEATKKAMGQISGAVIGITAVLISVFVPLAMFSGAAGNIYKQFALTMASSIAFSAFLALTLTPALC
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Known secondary structure (DSSP)


GGGS


STTT
 .........500.........510.........520.........530.........540.........550.........560
Sequence ATGFFGWFNKKFDSWTHGYEGRVAKVLRKTFRMMVVYIGLAVVGVFLFMRLPTSFLPTEDQGFVMVSVQL
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Known secondary structure (DSSP)

TTS
B
SS




S
 .........570.........580.........590.........600.........610.........620.........630
Sequence PAGATKERTDATLAQVTQLAKSIPEIENIITVSGFSFSGSGQNMAMGFAIFKDWNERTASGSDAVAVAGK
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Known secondary structure (DSSP)
SS

TT
TT
SS


TTT

STT
S
 .........640.........650.........660.........670.........680.........690.........700
Sequence LTGMMMGTLKDGFGIAVVPPPILELGSGLSINLQDRNNTGHTALLAKRNELIQKMRASGLFDPSTVRAGG
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Known secondary structure (DSSP)

SS


SSTT






SS


SSSS
SS


S
 .........710.........720.........730.........740.........750.........760.........770
Sequence LEDSPQLKIDINRAAAAAQGISFADIRTALASALSSSYVSDFPNQGRLQRVMVQADEDARMQPADILNLT
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Known secondary structure (DSSP)


T


S

SSS
TTTTT
TTS
 .........780.........790.........800.........810.........820.........830.........840
Sequence VPNKSGVAVPLSTIATVSWENGTEQSVRFNGYPSMKLSASPATGVSTGQAMEAVQKMVDELGGGYSFEWG
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Known secondary structure (DSSP)
TTS
GGGTSTT





SSS
TTTT

B
 .........850.........860.........870.........880.........890.........900.........910
Sequence GQSSEEAKGGSQTLILYGLAVAAVFLVLAALYESWSIPLAVILVIPLGLIGAAAGVTGRNLFEGLLGSVP
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Known secondary structure (DSSP)
STTTTS
S
SSTTSTTTTTS

 .........920.........930.........940.........950.........960.........970.........980
Sequence SFANDIYFQVGFVTVMGLSAKNAILIIEFAKDLQAQGKSAVEAALEAARLRFRPIIMTSFAFILGVVPLY
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Known secondary structure (DSSP)


B
TT

T
 .........990.........1000.........1010.........1020...
Sequence IAAGASSASQRAIGTTVFWGMLVGTLLSVFLVPLFYVVVRKFF
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Known secondary structure (DSSP) S

STTTT


Download:PDB structure FASTA sequence

Hidden Markov model

Image coloured by rainbow N → C terminus
Interactive 3D view in JSmol


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Accessibility Statement
Please cite: The Phyre2 web portal for protein modeling, prediction and analysis
Kelley LA et al. Nature Protocols 10, 845-858 (2015) [paper] [Citation link]
 
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