PHYRE Protein Fold Recognition Server

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Protein Homology/analogY Recognition Engine V 2.0

Fold library entry viewer: c4miwA_

Fold library id	PDB Header	Molecule	Title
c4miwA_	PDB header: viral protein, transferase	Chain: A: PDB Molecule: rna-directed rna polymerase l;	PDBTitle: high-resolution structure of the n-terminal endonuclease domain of the2 lassa virus l polymerase

Links to external resources
Added to library: Sat Mar 22 08:13:46 2014

1 . . . . . . . . 10 . . . . . . . . . 20 . . . . . . . . . 30 . . . . . . . . . 40 . . . . . . . . . 50 . . . . . . . . . 60 . . . . . . . . . 70

Sequence M E E D I A C V K D L V S K Y L V D N E R L S R Q K L A F L V Q T E P R M L L M E G L K L L S L C I E V D S C N A N G C E H N S E D K S V E

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
T
S S T
S T
T T

. . . . . . . . . 80 . . . . . . . . . 90 . . . . . . . . . 100 . . . . . . . . . 110 . . . . . . . . . 120 . . . . . . . . . 130 . . . . . . . . . 140

Sequence R I L H D H G I L T P S L C F V V P D G Y K L T G N V L I L L E C F V R S S P A N F E Q K Y I E D F K K L E Q L K E D L K S V D I N L I P L

Predicted secondary structure

SS confidence

Known secondary structure (DSSP) T
S T T
S S T T T T T

. . . . . . . . . 150 . . . . . . . . . 160 . . . . . . . . . 170

Sequence I D G R T S F Y N E Q I P D W V N D K L R D T L F S L L K Y

Predicted secondary structure

SS confidence

Known secondary structure (DSSP) S S
S S S
T T

Download: PDB structure FASTA sequence
Hidden Markov model

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Please cite: The Phyre2 web portal for protein modeling, prediction and analysis

Kelley LA et al. Nature Protocols 10, 845-858 (2015) [paper] [Citation link]

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	1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70
Sequence	M	E	E	D	I	A	C	V	K	D	L	V	S	K	Y	L	V	D	N	E	R	L	S	R	Q	K	L	A	F	L	V	Q	T	E	P	R	M	L	L	M	E	G	L	K	L	L	S	L	C	I	E	V	D	S	C	N	A	N	G	C	E	H	N	S	E	D	K	S	V	E
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)														T				S	S												T			S																									T					T	T
	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140
Sequence	R	I	L	H	D	H	G	I	L	T	P	S	L	C	F	V	V	P	D	G	Y	K	L	T	G	N	V	L	I	L	L	E	C	F	V	R	S	S	P	A	N	F	E	Q	K	Y	I	E	D	F	K	K	L	E	Q	L	K	E	D	L	K	S	V	D	I	N	L	I	P	L
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)							T												S						T	T											S	S																	T	T						T	T	T
	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170
Sequence	I	D	G	R	T	S	F	Y	N	E	Q	I	P	D	W	V	N	D	K	L	R	D	T	L	F	S	L	L	K	Y
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)					S	S				S	S	S																T	T