PHYRE Protein Fold Recognition Server

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Protein Homology/analogY Recognition Engine V 2.0

Fold library entry viewer: c4melB_

Fold library id	PDB Header	Molecule	Title
c4melB_	PDB header: hydrolase	Chain: B: PDB Molecule: ubiquitin carboxyl-terminal hydrolase 11;	PDBTitle: crystal structure of the human usp11 dusp-ubl domains

Links to external resources
Added to library: Sat May 10 08:13:31 2014

1 . . . . . . . . 10 . . . . . . . . . 20 . . . . . . . . . 30 . . . . . . . . . 40 . . . . . . . . . 50 . . . . . . . . . 60 . . . . . . . . . 70

Sequence L P G L D S Q W R Q I E N G E S G R E R P L R A G E S W F L V E K H W Y K Q W E A Y V Q G G D Q D S S T F P G C I N N A T L F Q D E I N W R

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
S T T T S T T
T T
T T T
S S S T T
S B
G G G B S
T T T

. . . . . . . . . 80 . . . . . . . . . 90 . . . . . . . . . 100 . . . . . . . . . 110 . . . . . . . . . 120 . . . . . . . . . 130 . . . . . . . . . 140

Sequence L K E G L V E G E D Y V L L P A A A W H Y L V S W Y G L E H G Q P P I E R K V I E L P N I Q K V E V Y P V E L L L V R H N D L G K S H T V Q

Predicted secondary structure

SS confidence

Known secondary structure (DSSP) B
S S
B T T T T
B
T T
S
T T

. . . . . . . . . 150 . . . . . . . . . 160 . . . . . . . . . 170 . . . . . . . . . 180 . . . . . . . . . 190 . . . . . . . . . 200 . . . . . . . . . 210

Sequence F S H T D S I G L V L R T A R E R F L V E P Q E D T R L W A K N S E G S L D R L Y D T H I T V L D A A L E T G Q L I I M E T R K K D G T W P

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
T T
B T T
T T S
T T T
S S S B T T T T T
T T
T T S
T

. . .

Sequence S A Q

Predicted secondary structure

SS confidence

Known secondary structure (DSSP) T

Download: PDB structure FASTA sequence
Hidden Markov model

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Please cite: The Phyre2 web portal for protein modeling, prediction and analysis

Kelley LA et al. Nature Protocols 10, 845-858 (2015) [paper] [Citation link]

© Structural Bioinformatics Group, Imperial College, London

Michael Sternberg

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	1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70
Sequence	L	P	G	L	D	S	Q	W	R	Q	I	E	N	G	E	S	G	R	E	R	P	L	R	A	G	E	S	W	F	L	V	E	K	H	W	Y	K	Q	W	E	A	Y	V	Q	G	G	D	Q	D	S	S	T	F	P	G	C	I	N	N	A	T	L	F	Q	D	E	I	N	W	R
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)													S	T	T	T	S	T	T					T	T																			T	T	T		S	S	S	T	T				S	B			G	G	G	B	S		T	T	T
	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140
Sequence	L	K	E	G	L	V	E	G	E	D	Y	V	L	L	P	A	A	A	W	H	Y	L	V	S	W	Y	G	L	E	H	G	Q	P	P	I	E	R	K	V	I	E	L	P	N	I	Q	K	V	E	V	Y	P	V	E	L	L	L	V	R	H	N	D	L	G	K	S	H	T	V	Q
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)	B		S	S			B	T	T	T																T		B		T	T																				S									T	T
	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210
Sequence	F	S	H	T	D	S	I	G	L	V	L	R	T	A	R	E	R	F	L	V	E	P	Q	E	D	T	R	L	W	A	K	N	S	E	G	S	L	D	R	L	Y	D	T	H	I	T	V	L	D	A	A	L	E	T	G	Q	L	I	I	M	E	T	R	K	K	D	G	T	W	P
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)			T	T		B												T	T			T	T	S									T	T	T								S	S	S	B	T	T	T	T	T			T	T										T	T	S			T
	.	.	.
Sequence	S	A	Q
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)	T