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 Protein Homology/analogY Recognition Engine V 2.0


 

Fold library entry viewer: c4mc5C_

Fold library idPDB HeaderMoleculeTitle
c4mc5C_PDB header: viral proteinChain: C: PDB Molecule: hemagglutinin;PDBTitle: crystal structure of a subtype h18 hemagglutinin homologue from2 a/flat-faced bat/peru/033/2010 (h18n11)


Added to library: Sat Oct 26 08:24:11 2013
 
Links to external resources


 1........10.........20.........30.........40.........50.........60.........70
Sequence GDQICIGYHSNNSTQTVNTLLESNVPVTSSHSILEKEHNGLLCKLKGKAPLDLIDCSLPAWLMGNPKCDE
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Known secondary structure (DSSP)

B

S




SS
SSBS







TTB


TTB
T
TTS

 .........80.........90.........100.........110.........120.........130.........140
Sequence LLTASEWAYIKEDPEPENGICFPGDFDSLEDLILLVSNTDHFRKEKIIDMTRFSDVTTNNVDSACPYDTN
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Known secondary structure (DSSP)

S
SS
SS
SB

SS


BTTSS


GGGS
SSB
S

BTTS
SSTT
 .........150.........160.........170.........180.........190.........200.........210
Sequence GASFYRNLNWVQQNKGKQLIFHYQNSENNPLLIIWGVHQTSNAAEQNTYYGSQTGSTTITIGEETNTYPL
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Known secondary structure (DSSP)

B

SS

B

TT



SSS
BSSSSS


TT

 .........220.........230.........240.........250.........260.........270.........280
Sequence VISESSILNGHSDRINYFWGVVNPNQNFSIVSTGNFIWPEYGYFFQKTTNISGIIKSSEKISDCDTICQT
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Known secondary structure (DSSP)
B




BTTBSS
TT
SSS


S




SS
S
 .........290.........300.........310.........320.........330.........340.........350
Sequence KIGAINSTLPFQNIHQNAIGDCPKYVKAQELVLATGLRNNPIKFGAIAGFIEGGWQGLIDGWYGYHHQNS
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Known secondary structure (DSSP) TT




S
S
S

S




S


S
B

B







GGG
BBTT

S
ST
 .........360.........370.........380.........390.........400.........410.........420
Sequence EGSGYAADKEATQKAVDAITTKVNNIIDKMNTQFESTAKEFNKIEMRIKHLSDRVDDGFLDVWSYNAELL
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Known secondary structure (DSSP) T
T




B






TT
 .........430.........440.........450.........460.........470.........480.........490
Sequence VLLENERTLDFHDANVNNLYQKVKVQLKDNAIDMGNGCFKILHKCNNTCMDDIKNGTYNYYEYRKESHLE
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Known secondary structure (DSSP) GGG
SSSSS


T


TGGG
 .......
Sequence KQKIDSG
Predicted secondary structure



SS confidence






Known secondary structure (DSSP) TT


Download:PDB structure FASTA sequence

Hidden Markov model

Image coloured by rainbow N → C terminus
Interactive 3D view in JSmol


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Accessibility Statement
Please cite: The Phyre2 web portal for protein modeling, prediction and analysis
Kelley LA et al. Nature Protocols 10, 845-858 (2015) [paper] [Citation link]
 
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Michael Sternberg 
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