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 Protein Homology/analogY Recognition Engine V 2.0


 

Fold library entry viewer: c4mbyB_

Fold library idPDB HeaderMoleculeTitle
c4mbyB_PDB header: viral proteinChain: B: PDB Molecule: major capsid protein vp1;PDBTitle: structure of b-lymphotropic polyomavirus vp1 in complex with 3'-2 sialyllactose


Added to library: Sat Dec 7 08:17:28 2013
 
Links to external resources


 1........10.........20.........30.........40.........50.........60.........70
Sequence SHMGGVEVLEVRTGPDAITQIEAYLNPRMGNNIPSEDLYGYSNSINTAFSKASDTPNKDTLPCYSVAVIK
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Known secondary structure (DSSP)














TT

BSS

STTSTTTTB






SSSS
B


TT
S
B
 .........80.........90.........100.........110.........120.........130.........140
Sequence LPLLNEDMTCDTILMWEAVSVKTEVVGISSLVNLHQGGKYIYGSSSGCVPVQGTTYHMFAVGGEPLELQG
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Known secondary structure (DSSP)




S


SS

GGGG

S
SSSSBSSSTTS
B

SBS
SS

 .........150.........160.........170.........180.........190.........200.........210
Sequence LVASSTATYPDDVVAIKNMKPGNQGLDPKAKALLDKDGKYPVEVWCPDPSKNENTRYYGSFTGGATTPPV
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Known secondary structure (DSSP)

S
TTB


TTS


TT

GGGGS

TT


STT
SBTTT
TTS
TT

SS



 .........220.........230.........240.........250.........260.........270.....
Sequence MQFTNSVTTVLLDENGVGPLCKGDKLFLSCADIAGVHTNYSETQVWRGLPRYFNVTLRKRIVKNP
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Known secondary structure (DSSP)



S





TTS


B
GGG
TTS





Download:PDB structure FASTA sequence

Hidden Markov model

Image coloured by rainbow N → C terminus
Interactive 3D view in JSmol


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Accessibility Statement
Please cite: The Phyre2 web portal for protein modeling, prediction and analysis
Kelley LA et al. Nature Protocols 10, 845-858 (2015) [paper] [Citation link]
 
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Michael Sternberg 
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