PHYRE Protein Fold Recognition Server

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Protein Homology/analogY Recognition Engine V 2.0

Fold library entry viewer: c4maaA_

Fold library id	PDB Header	Molecule	Title
c4maaA_	PDB header: transport protein	Chain: A: PDB Molecule: putative branched-chain amino acid abc transporter,	PDBTitle: the crystal structure of amino acid abc transporter substrate-binding2 protein from pseudomonas fluorescens pf-5

Links to external resources
Added to library: Sat Dec 7 08:41:15 2013

1 . . . . . . . . 10 . . . . . . . . . 20 . . . . . . . . . 30 . . . . . . . . . 40 . . . . . . . . . 50 . . . . . . . . . 60 . . . . . . . . . 70

Sequence F A A E P F T F Y G L K S X S G A F A S Y G K F A D X G S R L A V E Q Y P T L L G R P L H Y K V I D T E G N A G K A V R R V Q E A I A Q D G

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
S S T T T
S T T
T T

. . . . . . . . . 80 . . . . . . . . . 90 . . . . . . . . . 100 . . . . . . . . . 110 . . . . . . . . . 120 . . . . . . . . . 130 . . . . . . . . . 140

Sequence A R F F Q G C T L S S S A L A V A K E V G K V G G V F X T P V G A D E I T G K D C N A S T F R W S V P T Y G A I R E T X V P L I K L L P E A

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
S S T
G G G G T T T
T T
S
T T

. . . . . . . . . 150 . . . . . . . . . 160 . . . . . . . . . 170 . . . . . . . . . 180 . . . . . . . . . 190 . . . . . . . . . 200 . . . . . . . . . 210

Sequence K R W Y T I T P Q Y V F G E A L L E G A K Q V C A E H G I E H I G N S Y H S L Q E Q E F S G Y L T N A I A A R P D V L V L L N F G S Q S S N

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
S S T
T T
S

. . . . . . . . . 220 . . . . . . . . . 230 . . . . . . . . . 240 . . . . . . . . . 250 . . . . . . . . . 260 . . . . . . . . . 270 . . . . . . . . . 280

Sequence A L R Q A V N F G I K E R X K V L L V W S A G L D Q F Q E L G S D V L E G V Y L G A Q Y W H Q V D T P L N R E L V K L T Q A K Y G I N P T Y

Predicted secondary structure

SS confidence

Known secondary structure (DSSP) T S S S
T B T
S
T T
T S S

. . . . . . . . . 290 . . . . . . . . . 300 . . . . . . . . . 310 . . . . . . . . . 320 . . . . . . . . . 330 . . . . . . . . . 340 . . . . . . . . . 350

Sequence P L A A D Y I G S K I I L D T I A A T G S F D G A T V A K A X Q G L T Y Q G P T G E E S I R A G D H Q V I K D Y Y L L V G K A A A T X R D K

Predicted secondary structure

SS confidence

Known secondary structure (DSSP) T
T T
T T
T T T
B
G G G
S S T

. . . . . . . . . 360 . . . . . . . . . 370 . . .

Sequence D D L A E V L S A G R S F P D V S A T G C A L

Predicted secondary structure

SS confidence

Known secondary structure (DSSP) T
G G G T T

Download: PDB structure FASTA sequence
Hidden Markov model

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Please cite: The Phyre2 web portal for protein modeling, prediction and analysis

Kelley LA et al. Nature Protocols 10, 845-858 (2015) [paper] [Citation link]

© Structural Bioinformatics Group, Imperial College, London

Michael Sternberg

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	1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70
Sequence	F	A	A	E	P	F	T	F	Y	G	L	K	S	X	S	G	A	F	A	S	Y	G	K	F	A	D	X	G	S	R	L	A	V	E	Q	Y	P	T	L	L	G	R	P	L	H	Y	K	V	I	D	T	E	G	N	A	G	K	A	V	R	R	V	Q	E	A	I	A	Q	D	G
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)															S	S	T	T																	T		S			T	T											T	T
	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140
Sequence	A	R	F	F	Q	G	C	T	L	S	S	S	A	L	A	V	A	K	E	V	G	K	V	G	G	V	F	X	T	P	V	G	A	D	E	I	T	G	K	D	C	N	A	S	T	F	R	W	S	V	P	T	Y	G	A	I	R	E	T	X	V	P	L	I	K	L	L	P	E	A
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)								S	S															T										G	G	G	G	T	T	T			T	T					S																			T	T
	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210
Sequence	K	R	W	Y	T	I	T	P	Q	Y	V	F	G	E	A	L	L	E	G	A	K	Q	V	C	A	E	H	G	I	E	H	I	G	N	S	Y	H	S	L	Q	E	Q	E	F	S	G	Y	L	T	N	A	I	A	A	R	P	D	V	L	V	L	L	N	F	G	S	Q	S	S	N
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)									S	S																		T											T	T																	S
	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280
Sequence	A	L	R	Q	A	V	N	F	G	I	K	E	R	X	K	V	L	L	V	W	S	A	G	L	D	Q	F	Q	E	L	G	S	D	V	L	E	G	V	Y	L	G	A	Q	Y	W	H	Q	V	D	T	P	L	N	R	E	L	V	K	L	T	Q	A	K	Y	G	I	N	P	T	Y
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)									T					S					S	S			T													B	T						S			T	T																	T	S	S
	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350
Sequence	P	L	A	A	D	Y	I	G	S	K	I	I	L	D	T	I	A	A	T	G	S	F	D	G	A	T	V	A	K	A	X	Q	G	L	T	Y	Q	G	P	T	G	E	E	S	I	R	A	G	D	H	Q	V	I	K	D	Y	Y	L	L	V	G	K	A	A	A	T	X	R	D	K
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)																				T												T	T						T	T							T	T	T		B													G	G	G		S	S	T
	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.
Sequence	D	D	L	A	E	V	L	S	A	G	R	S	F	P	D	V	S	A	T	G	C	A	L
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)	T															G	G	G	T	T