PHYRE Protein Fold Recognition Server

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Protein Homology/analogY Recognition Engine V 2.0

Fold library entry viewer: c4m9rB_

Fold library id	PDB Header	Molecule	Title
c4m9rB_	PDB header: hydrolase	Chain: B: PDB Molecule: cell death protein 3;	PDBTitle: crystal structure of ced-3

Links to external resources
Added to library: Sat Oct 12 08:27:29 2013

1 . . . . . . . . 10 . . . . . . . . . 20 . . . . . . . . . 30 . . . . . . . . . 40 . . . . . . . . . 50 . . . . . . . . . 60 . . . . . . . . . 70

Sequence T Q Y I F H E E D M N F V D A P T I S R V F D E K T M Y R N F S S P R G M C L I I N N E H F E Q M P T R N G T K A D K D N L T N L F R C M G

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
G G G
T T T B
S S
S S S
T T T T

. . . . . . . . . 80 . . . . . . . . . 90 . . . . . . . . . 100 . . . . . . . . . 110 . . . . . . . . . 120 . . . . . . . . . 130 . . . . . . . . . 140

Sequence Y T V I C K D N L T G R G M L L T I R D F A K H E S H G D S A I L V I L S H G E E N V I I G V D D I P I S T H E I Y D L L N A A N A P R L A

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
S
S
T T
T T S
T S T T T
T T S T

. . . . . . . . . 150 . . . . . . . . . 160 . . . . . . . . . 170 . . . . . . . . . 180 . . . . . . . . . 190 . . . . . . . . . 200 . . . . . . . . . 210

Sequence N K P K I V F V Q A S R R K K P S Q A D I L I A Y A T T G S W F I Q A V C E V F S T H A K D M D V V E L L T E V N K K V A C G M P E M T S R

Predicted secondary structure

SS confidence

Known secondary structure (DSSP) T S
T T T T
T T T S

. . . . . . . . . 220 . . .

Sequence L L K K F Y F W P E A R N

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
S S B
S

Download: PDB structure FASTA sequence
Hidden Markov model

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Please cite: The Phyre2 web portal for protein modeling, prediction and analysis

Kelley LA et al. Nature Protocols 10, 845-858 (2015) [paper] [Citation link]

© Structural Bioinformatics Group, Imperial College, London

Michael Sternberg

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	1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70
Sequence	T	Q	Y	I	F	H	E	E	D	M	N	F	V	D	A	P	T	I	S	R	V	F	D	E	K	T	M	Y	R	N	F	S	S	P	R	G	M	C	L	I	I	N	N	E	H	F	E	Q	M	P	T	R	N	G	T	K	A	D	K	D	N	L	T	N	L	F	R	C	M	G
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)							G	G	G															T	T	T	B						S	S													S	S	S				T	T															T	T
	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140
Sequence	Y	T	V	I	C	K	D	N	L	T	G	R	G	M	L	L	T	I	R	D	F	A	K	H	E	S	H	G	D	S	A	I	L	V	I	L	S	H	G	E	E	N	V	I	I	G	V	D	D	I	P	I	S	T	H	E	I	Y	D	L	L	N	A	A	N	A	P	R	L	A
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)								S																					S												T	T					T	T	S												T	S	T	T	T		T	T	S	T
	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210
Sequence	N	K	P	K	I	V	F	V	Q	A	S	R	R	K	K	P	S	Q	A	D	I	L	I	A	Y	A	T	T	G	S	W	F	I	Q	A	V	C	E	V	F	S	T	H	A	K	D	M	D	V	V	E	L	L	T	E	V	N	K	K	V	A	C	G	M	P	E	M	T	S	R
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)	T	S															T	T	T	T																								T	T	T	S
	.	.	.	.	.	.	.	.	.	220	.	.	.
Sequence	L	L	K	K	F	Y	F	W	P	E	A	R	N
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)		S	S	B							S