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 Protein Homology/analogY Recognition Engine V 2.0


 

Fold library entry viewer: c4m8oA_

Fold library idPDB HeaderMoleculeTitle
c4m8oA_PDB header: transferase/dnaChain: A: PDB Molecule: dna polymerase epsilon catalytic subunit a;PDBTitle: ternary complex of dna polymerase epsilon with an incoming datp


Added to library: Sat Nov 30 08:36:48 2013
 
Links to external resources


 1........10.........20.........30.........40.........50.........60.........70
Sequence ALSAQQLLNASKIDDIDSMMGFERYVPPQYNGRFDAKDIDQIPGRVGWLTNMHATLVSQEVTTNQGISGV
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Known secondary structure (DSSP)

TT

B






S


STTTTTSSS





SS
 .........80.........90.........100.........110.........120.........130.........140
Sequence DFYFLDEEGGSFKSTVVYDPYFFIACNDESRVNDVEELVKKYLESCLKSLQIIRKEDLTMDNHLLGLQKT
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Known secondary structure (DSSP) TTS



S
GGGTTTT

B
TTSTTGGGT

 .........150.........160.........170.........180.........190.........200.........210
Sequence LIKLSFVNSNQLFEARKLLRPILQDNANNNVQRNIYNVKVDAKHLIEDIREYDVPYHVRVSIDKDIRVGK
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Known secondary structure (DSSP)
SS



S
TTT



GGGGS
S

T

TTS
 .........220.........230.........240.........250.........260.........270.........280
Sequence WYKVTQQGFIEDTRKIAFADPVVMAFAIATTKPPLKFPDSAVDQIMMISYMIDGEGFLITNREIISEDIE
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Known secondary structure (DSSP) TT
TT

S







TTS


TTT

TTTTTS
S


 .........290.........300.........310.........320.........330.........340.........350
Sequence DFEYTPKPEYPGFFTIFNENDEVALLQRFFEHIRDVRPTVISTFNGDFFDWPFIHNRSKIHGLDMFDEIG
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Known secondary structure (DSSP)


SSTTS

SS

SSSTTTTTT

S
 .........360.........370.........380.........390.........400.........410.........420
Sequence FAPDAEGEYKSSYCSHMDCFRWVKRDSYLPQGSQGLKAVTQSKLGYNPIELDPELMTPYAFEKPQHLSEY
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Known secondary structure (DSSP)

TTS

SSSS


GGG
S
S





GGG
 .........430.........440.........450.........460.........470.........480.........490
Sequence SVSDAVATYYLYMKYVHPFIFSLCTIIPLNPDETLRKGTGTLCEMLLMVQAYQHNILLPNKHTDPIERFY
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Known secondary structure (DSSP) TTTSSS
S
TTB








S

 .........500.........510.........520.........530.........540.........550.........560
Sequence DGHLLESETYVGGHVESLEAGVFRSDLKNEFKIDPSAIDELLQELPEALKFSVEVENKSSVDKVTNFEEI
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Known secondary structure (DSSP) TT






TTS


TTS


GGGBSS
 .........570.........580.........590.........600.........610.........620.........630
Sequence KNQITQKLLELKENNIRNELPLIYHVDVASMYPNIMTTNRLQPDSIKAERDCASCTCARKLKWAWRGEFF
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Known secondary structure (DSSP) S

TTT

GGGSS
SSS




 .........640.........650.........660.........670.........680.........690.........700
Sequence PSKMDEYNMIKRALQNETFPNKNKFSKKKVLTFDELSYADQVIHIKKRLTEYSRKVYHRVKVSEIVEREA
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Known secondary structure (DSSP) S

T



TT
S

GGGS
S
S
 .........710.........720.........730.........740.........750.........760.........770
Sequence IVCQRENPFYVDTVKSFRDRRYEFKGLAKTWKGNLSKIDPSDKHARDEAKKMIVLYDSLQLAHKVILNSF
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Known secondary structure (DSSP) SSS

TTTSSS



 .........780.........790.........800.........810.........820.........830.........840
Sequence YGYVMRKGSRWYSMEMAGITCLTGATIIQMARALVERVGRPLELDTDGIWCILPKSFPETYFFTLENGKK
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Known secondary structure (DSSP) GGGSTT
SS

STTTTS

BTTS
 .........850.........860.........870.........880.........890.........900.........910
Sequence LYLSYPCSMLNYRVHQKFTNHQYQELKDPLNYIYETHSENTIFFEVDGPYKAMILPSSKEEGKGIKKRYA
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Known secondary structure (DSSP)
TTTT



S
B
SSTT
B

S
 .........920.........930.........940.........950.........960.........970.........980
Sequence VFNEDGSLAELKGFELKRRGELQLIKNFQSDIFKVFLEGDTLEGCYSAVASVCNRWLDVLDSHGLMLEDE
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Known secondary structure (DSSP)
TTS
SSTTTSSSGGGGG

SSTTTTTS
 .........990.........1000.........1010.........1020.........1030.........1040.........1050
Sequence DLVSLICENRSMSKTLKEYEGQKSTSITTARRLGDFLGEDMVKDKGLQCKYIISSKPFNAPVTERAIPVA
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Known secondary structure (DSSP)

SS
GGGGTT



GGGGSSSS
BS
STT

GGG
GG
 .........1060.........1070.........1080.........1090.........1100.........1110.........1120
Sequence IFSADIPIKRSFLRRWTLDPSLEDLDIRTIIDWGYYRERLGSAIQKIITIPAALQGVSNPVPRVEHPDWL
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Known secondary structure (DSSP) GGGS
T
TT




B
TTT


S
TTS


 ......
Sequence KRKIAT
Predicted secondary structure


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Known secondary structure (DSSP) S


Download:PDB structure FASTA sequence

Hidden Markov model

Image coloured by rainbow N → C terminus
Interactive 3D view in JSmol


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Please cite: The Phyre2 web portal for protein modeling, prediction and analysis
Kelley LA et al. Nature Protocols 10, 845-858 (2015) [paper] [Citation link]
 
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