PHYRE Protein Fold Recognition Server

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Protein Homology/analogY Recognition Engine V 2.2

Fold library entry viewer: c4m5bA_

Fold library id	PDB Header	Molecule	Title
c4m5bA_	PDB header: membrane protein	Chain: A: PDB Molecule: cobalamin biosynthesis protein cbim;	PDBTitle: crystal structure of an truncated transition metal transporter

Links to external resources
Added to library: Sat Mar 29 08:19:01 2014

1 . . . . . . . . 10 . . . . . . . . . 20 . . . . . . . . . 30 . . . . . . . . . 40 . . . . . . . . . 50 . . . . . . . . . 60 . . . . . . . . . 70

Sequence M H I P E G Y L S P Q T C A V M G A A M V P V L T V A A K K V N K S F D K K D V P A M A I G S A F A F T I M M F N V P I P G G T T A H A I G

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
T T S S
G G G T S
T T S

. . . . . . . . . 80 . . . . . . . . . 90 . . . . . . . . . 100 . . . . . . . . . 110 . . . . . . . . . 120 . . . . . . . . . 130 . . . . . . . . . 140

Sequence A T L L A T T L G P W A A S I S L T L A L F I Q A L L F G D G G I L A L G A N S F N M A F I A P F V G Y G I Y R L M L S L K L N K V L S S A

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
S
S T T T T T

. . . . . . . . . 150 . . . . . . . . . 160 . . . . . . . . . 170 . . . . . . . . . 180 . . . . . . . . . 190 . . . . . . . . . 200 . . . . . . . . . 210

Sequence I G G Y V G I N A A A L A T A I E L G L Q P L L F H T A N G T P L Y F P Y G L N V A I P A M M F A H L T V A G I V E A V I T G L V V Y Y L L

Predicted secondary structure

SS confidence

Known secondary structure (DSSP) S B
T T
B S S
T

. . . .

Sequence E H H H

Predicted secondary structure

SS confidence

Known secondary structure (DSSP) S

Download: PDB structure FASTA sequence
Hidden Markov model

Image coloured by rainbow N → C terminus

Interactive 3D view in JSmol

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Accessibility Statement

Please cite: Phyre2.2: A Community Resource for Template-based Protein Structure Prediction

Powell HR et al. Journal of Molecular Biology (2025) in press DOI: https://doi.org/10.1016/j.jmb.2025.168960

© Structural Bioinformatics Group, Imperial College, London

Michael Sternberg

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	1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70
Sequence	M	H	I	P	E	G	Y	L	S	P	Q	T	C	A	V	M	G	A	A	M	V	P	V	L	T	V	A	A	K	K	V	N	K	S	F	D	K	K	D	V	P	A	M	A	I	G	S	A	F	A	F	T	I	M	M	F	N	V	P	I	P	G	G	T	T	A	H	A	I	G
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)					T	T	S	S																													G	G	G																T	S					T	T	S
	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140
Sequence	A	T	L	L	A	T	T	L	G	P	W	A	A	S	I	S	L	T	L	A	L	F	I	Q	A	L	L	F	G	D	G	G	I	L	A	L	G	A	N	S	F	N	M	A	F	I	A	P	F	V	G	Y	G	I	Y	R	L	M	L	S	L	K	L	N	K	V	L	S	S	A
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)																															S		S	T	T										T																T	T
	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210
Sequence	I	G	G	Y	V	G	I	N	A	A	A	L	A	T	A	I	E	L	G	L	Q	P	L	L	F	H	T	A	N	G	T	P	L	Y	F	P	Y	G	L	N	V	A	I	P	A	M	M	F	A	H	L	T	V	A	G	I	V	E	A	V	I	T	G	L	V	V	Y	Y	L	L
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)																									S	B		T	T			B	S	S																			T
	.	.	.	.
Sequence	E	H	H	H
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)		S