PHYRE Protein Fold Recognition Server

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Protein Homology/analogY Recognition Engine V 2.0

Fold library entry viewer: c4m0qB_

Fold library id	PDB Header	Molecule	Title
c4m0qB_	PDB header: viral protein	Chain: B: PDB Molecule: membrane-associated protein vp24;	PDBTitle: ebola virus vp24 structure

Links to external resources
Added to library: Sat Mar 22 08:12:37 2014

1 . . . . . . . . 10 . . . . . . . . . 20 . . . . . . . . . 30 . . . . . . . . . 40 . . . . . . . . . 50 . . . . . . . . . 60 . . . . . . . . . 70

Sequence M I S P K K D L E K G V V L S D L C N F L V S Q T I Q G W K V Y W A G I E F D V T H K G M A L L H R L K T N D F A P A W S M T R N L F P H L

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
S S
S S B
S S T T
T T T S
T T S

. . . . . . . . . 80 . . . . . . . . . 90 . . . . . . . . . 100 . . . . . . . . . 110 . . . . . . . . . 120 . . . . . . . . . 130 . . . . . . . . . 140

Sequence F Q N P N S T I E S P L W A L R V I L A A G I Q D Q L I D Q S L I E P L A G A L G L I S D W L L T T N T N H F N M R T Q R V K E Q L S L K M

Predicted secondary structure

SS confidence

Known secondary structure (DSSP) T
T T
T T T T S
S
S B
T T T G G G

. . . . . . . . . 150 . . . . . . . . . 160 . . . . . . . . . 170 . . . . . . . . . 180 . . . . . . . . . 190 . . . . . . . . . 200 . . . . . . . . . 210

Sequence L S L I R S N I L K F I N K L D A L H V V N Y N G L L S S I E I G T Q N H T I I I T R T N M G F L V E L Q E P D K S A M N R M K P G P A K F

Predicted secondary structure

SS confidence

Known secondary structure (DSSP) T
S
S S S
S S
T T
T T
G G G
T T S

. . . . . . . . . 220 . .

Sequence S L L H E S T L K A F T

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
T T

Download: PDB structure FASTA sequence
Hidden Markov model

Image coloured by rainbow N → C terminus

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Please cite: The Phyre2 web portal for protein modeling, prediction and analysis

Kelley LA et al. Nature Protocols 10, 845-858 (2015) [paper] [Citation link]

© Structural Bioinformatics Group, Imperial College, London

Michael Sternberg

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	1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70
Sequence	M	I	S	P	K	K	D	L	E	K	G	V	V	L	S	D	L	C	N	F	L	V	S	Q	T	I	Q	G	W	K	V	Y	W	A	G	I	E	F	D	V	T	H	K	G	M	A	L	L	H	R	L	K	T	N	D	F	A	P	A	W	S	M	T	R	N	L	F	P	H	L
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)			S	S			S											S	B							S	S							T	T								T	T								T	S					T	T	S
	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140
Sequence	F	Q	N	P	N	S	T	I	E	S	P	L	W	A	L	R	V	I	L	A	A	G	I	Q	D	Q	L	I	D	Q	S	L	I	E	P	L	A	G	A	L	G	L	I	S	D	W	L	L	T	T	N	T	N	H	F	N	M	R	T	Q	R	V	K	E	Q	L	S	L	K	M
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)		T		T	T																					T	T	T	T	S		S																					S	B						T	T	T	G	G	G
	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210
Sequence	L	S	L	I	R	S	N	I	L	K	F	I	N	K	L	D	A	L	H	V	V	N	Y	N	G	L	L	S	S	I	E	I	G	T	Q	N	H	T	I	I	I	T	R	T	N	M	G	F	L	V	E	L	Q	E	P	D	K	S	A	M	N	R	M	K	P	G	P	A	K	F
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)																	T				S		S	S	S										S	S									T	T									T	T		G	G	G		T	T	S
	.	.	.	.	.	.	.	.	.	220	.	.
Sequence	S	L	L	H	E	S	T	L	K	A	F	T
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)										T	T