PHYRE Protein Fold Recognition Server

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Protein Homology/analogY Recognition Engine V 2.2

Fold library entry viewer: c4lykB_

Fold library id	PDB Header	Molecule	Title
c4lykB_	PDB header: hydrolase	Chain: B: PDB Molecule: cyclic di-gmp phosphodiesterase yaha;	PDBTitle: crystal structure of the eal domain of c-di-gmp specific2 phosphodiesterase yaha in complex with activating cofactor mg++

Links to external resources
Added to library: Sat Feb 1 09:25:28 2014

1 . . . . . . . . 10 . . . . . . . . . 20 . . . . . . . . . 30 . . . . . . . . . 40 . . . . . . . . . 50 . . . . . . . . . 60 . . . . . . . . . 70

Sequence I V T P E A I S L A L E N H E F K P W I Q P V F C A Q T G V L T G C E V L V R W E H P Q T G I I P P D Q F I P L A E S S G L I V I M T R Q L

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
T T
T T T
T T T
S T

. . . . . . . . . 80 . . . . . . . . . 90 . . . . . . . . . 100 . . . . . . . . . 110 . . . . . . . . . 120 . . . . . . . . . 130 . . . . . . . . . 140

Sequence M K Q T A D I L M P V K H L L P D N F H I G I N V S A G C F L A A G F E K E C L N L V N K L G N D K I K L V L E L T E R N P I P V T P E A R

Predicted secondary structure

SS confidence

Known secondary structure (DSSP) G G G G G G S
T T
T S T T
T T T
S S S
S

. . . . . . . . . 150 . . . . . . . . . 160 . . . . . . . . . 170 . . . . . . . . . 180 . . . . . . . . . 190 . . . . . . . . . 200 . . . . . . . . . 210

Sequence A I F D S L H Q H N I T F A L D D F G T G Y A T Y R Y L Q A F P V D F I K I D K S F V Q M A S V D E I S G H I V D N I V E L A R K P G L S I

Predicted secondary structure

SS confidence

Known secondary structure (DSSP) T T
T S T T
S
S
T T T T T S S S T T T

. . . . . . . . . 220 . . . . . . . . . 230 . . . . . . . . . 240 . . . . . . . . . 250 . . .

Sequence V A E G V E T Q E Q A D L M I G K G V H F L Q G Y L Y S P P V P G N K F I S E W V M K

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
S T T
S T T T
T

Download: PDB structure FASTA sequence
Hidden Markov model

Image coloured by rainbow N → C terminus

Interactive 3D view in JSmol

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Accessibility Statement

Please cite: Phyre2.2: A Community Resource for Template-based Protein Structure Prediction

Powell HR et al. Journal of Molecular Biology (2025) in press DOI: https://doi.org/10.1016/j.jmb.2025.168960

© Structural Bioinformatics Group, Imperial College, London

Michael Sternberg

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	1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70
Sequence	I	V	T	P	E	A	I	S	L	A	L	E	N	H	E	F	K	P	W	I	Q	P	V	F	C	A	Q	T	G	V	L	T	G	C	E	V	L	V	R	W	E	H	P	Q	T	G	I	I	P	P	D	Q	F	I	P	L	A	E	S	S	G	L	I	V	I	M	T	R	Q	L
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)													T	T												T	T	T															T	T	T																S	T
	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140
Sequence	M	K	Q	T	A	D	I	L	M	P	V	K	H	L	L	P	D	N	F	H	I	G	I	N	V	S	A	G	C	F	L	A	A	G	F	E	K	E	C	L	N	L	V	N	K	L	G	N	D	K	I	K	L	V	L	E	L	T	E	R	N	P	I	P	V	T	P	E	A	R
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)									G	G	G	G	G	G	S		T	T													T	S	T	T														T	T	T									S	S	S					S
	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210
Sequence	A	I	F	D	S	L	H	Q	H	N	I	T	F	A	L	D	D	F	G	T	G	Y	A	T	Y	R	Y	L	Q	A	F	P	V	D	F	I	K	I	D	K	S	F	V	Q	M	A	S	V	D	E	I	S	G	H	I	V	D	N	I	V	E	L	A	R	K	P	G	L	S	I
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)									T	T									T	S	T	T									S			S										T	T	T	T	T	S	S	S														T	T	T
	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.
Sequence	V	A	E	G	V	E	T	Q	E	Q	A	D	L	M	I	G	K	G	V	H	F	L	Q	G	Y	L	Y	S	P	P	V	P	G	N	K	F	I	S	E	W	V	M	K
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)							S										T	T						S	T	T	T														T