PHYRE Protein Fold Recognition Server

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Protein Homology/analogY Recognition Engine V 2.2

Fold library entry viewer: c4lt5A_

Fold library id	PDB Header	Molecule	Title
c4lt5A_	PDB header: oxidoreductase/dna	Chain: A: PDB Molecule: naegleria tet-like dioxygenase;	PDBTitle: structure of a naegleria tet-like dioxygenase in complex with 5-2 methylcytosine dna

Links to external resources
Added to library: Sat Jan 11 09:24:27 2014

1 . . . . . . . . 10 . . . . . . . . . 20 . . . . . . . . . 30 . . . . . . . . . 40 . . . . . . . . . 50 . . . . . . . . . 60 . . . . . . . . . 70

Sequence I N K K S L L Q N L L S K C K T T F Q Q S F T N A N I T L K D E K W L K N V R T A Y F V C D H D G S V E L A Y L P N V L P K E L V E E F T E

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
T S
T T
S S S
S
S
S S
S S
S

. . . . . . . . . 80 . . . . . . . . . 90 . . . . . . . . . 100 . . . . . . . . . 110 . . . . . . . . . 120 . . . . . . . . . 130 . . . . . . . . . 140

Sequence K F E S I Q T G R K K D T G Y S G I L D N S M P F N Y V T A D L S Q E L G Q Y L S E I V N P Q I N Y Y I S K L L T C V S S R T I N Y L V S L

Predicted secondary structure

SS confidence

Known secondary structure (DSSP) T
S S S
T T S S S
G G G G S T
T T S

. . . . . . . . . 150 . . . . . . . . . 160 . . . . . . . . . 170 . . . . . . . . . 180 . . . . . . . . . 190 . . . . . . . . . 200 . . . . . . . . . 210

Sequence N D S Y Y A L N N C L Y P S T A F N S L K P S N D G H R I R K P H K D N L D I T P S S L F Y F G N F Q N T E G Y L E L T D K N C K V F V Q P

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
T S S S S
T T
T T S G G G S
B
T T B S S
T T S S
G G G T
T

. . . . . . . . . 220 . . . . . . . . . 230 . . . . . . . . . 240 . . . . . . . . . 250 . . . . . . . . . 260 . . . . .

Sequence G D V L F F K G N E Y K H V V A N I T S G W R I G L V Y F A H K G S K T K P Y Y E D T Q K N S L K I H K E T K

Predicted secondary structure

SS confidence

Known secondary structure (DSSP) T
T T T S
S S S
B T S
T

Download: PDB structure FASTA sequence
Hidden Markov model

Image coloured by rainbow N → C terminus

Interactive 3D view in JSmol

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Accessibility Statement

Please cite: Phyre2.2: A Community Resource for Template-based Protein Structure Prediction

Powell HR et al. Journal of Molecular Biology (2025) in press DOI: https://doi.org/10.1016/j.jmb.2025.168960

© Structural Bioinformatics Group, Imperial College, London

Michael Sternberg

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	1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70
Sequence	I	N	K	K	S	L	L	Q	N	L	L	S	K	C	K	T	T	F	Q	Q	S	F	T	N	A	N	I	T	L	K	D	E	K	W	L	K	N	V	R	T	A	Y	F	V	C	D	H	D	G	S	V	E	L	A	Y	L	P	N	V	L	P	K	E	L	V	E	E	F	T	E
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)																			T	S			T	T						S	S	S				S				S							S	S									S	S		S
	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140
Sequence	K	F	E	S	I	Q	T	G	R	K	K	D	T	G	Y	S	G	I	L	D	N	S	M	P	F	N	Y	V	T	A	D	L	S	Q	E	L	G	Q	Y	L	S	E	I	V	N	P	Q	I	N	Y	Y	I	S	K	L	L	T	C	V	S	S	R	T	I	N	Y	L	V	S	L
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)								T		S	S	S									T	T	S	S	S					G	G	G	G	S									T																									T	T	S
	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210
Sequence	N	D	S	Y	Y	A	L	N	N	C	L	Y	P	S	T	A	F	N	S	L	K	P	S	N	D	G	H	R	I	R	K	P	H	K	D	N	L	D	I	T	P	S	S	L	F	Y	F	G	N	F	Q	N	T	E	G	Y	L	E	L	T	D	K	N	C	K	V	F	V	Q	P
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)									T	S	S	S	S									T	T		T	T	S	G	G	G	S		B			T	T	B	S	S												T	T	S	S					G	G	G	T							T
	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.
Sequence	G	D	V	L	F	F	K	G	N	E	Y	K	H	V	V	A	N	I	T	S	G	W	R	I	G	L	V	Y	F	A	H	K	G	S	K	T	K	P	Y	Y	E	D	T	Q	K	N	S	L	K	I	H	K	E	T	K
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)	T							T	T	T	S								S	S	S										B	T					S																	T