PHYRE Protein Fold Recognition Server

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Protein Homology/analogY Recognition Engine V 2.0

Fold library entry viewer: c4lpsA_

Fold library id	PDB Header	Molecule	Title
c4lpsA_	PDB header: metal binding protein	Chain: A: PDB Molecule: hydrogenase/urease nickel incorporation protein hypb;	PDBTitle: crystal structure of hypb from helicobacter pylori in complex with2 nickel

Links to external resources
Added to library: Sat Jan 11 09:20:06 2014

1 . . . . . . . . 10 . . . . . . . . . 20 . . . . . . . . . 30 . . . . . . . . . 40 . . . . . . . . . 50 . . . . . . . . . 60 . . . . . . . . . 70

Sequence S K N D I K A A E M K E R Y L K E G L Y V L N F M S S P G S G K T T M L E N L A D F K D F K F C V V E G D L Q T N R D A D R L R K K G V S A

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
T T
S T T S S T T
T T
S S
S T T T

. . . . . . . . . 80 . . . . . . . . . 90 . . . . . . . . . 100 . . . . . . . . . 110 . . . . . . . . . 120 . . . . . . . . . 130 . . . . . . . . . 140

Sequence H Q I T T G E A C H L E A S M I E G A F D L L K D E G A L E K S D F L I I E N V G N L V C P S S Y N L G A A M N I V L L S V P E G D D K V L

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
T T
S S
T T T T T T
S
S
S S G G G G
S G G G
T T

. . . . . . . . . 150 . . . . . . . . . 160 . . . . . . . . . 170 . . . . . . . . . 180 . . . . . . . . . 190 . . . . . . . . . 200 . . . . . . . . . 210

Sequence K Y P T M F M C A D A V I I S K A D M V E V F N F R V S Q V K E D M Q K L K P E A P I F L M S S K D P K S L E D F K N F L L E K K R E N Y Q

Predicted secondary structure

SS confidence

Known secondary structure (DSSP) S T
S
G G G T T T T T
T T S
T T
T

. . . . .

Sequence S T H S F

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)

Download: PDB structure FASTA sequence
Hidden Markov model

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Please cite: The Phyre2 web portal for protein modeling, prediction and analysis

Kelley LA et al. Nature Protocols 10, 845-858 (2015) [paper] [Citation link]

© Structural Bioinformatics Group, Imperial College, London

Michael Sternberg

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	1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70
Sequence	S	K	N	D	I	K	A	A	E	M	K	E	R	Y	L	K	E	G	L	Y	V	L	N	F	M	S	S	P	G	S	G	K	T	T	M	L	E	N	L	A	D	F	K	D	F	K	F	C	V	V	E	G	D	L	Q	T	N	R	D	A	D	R	L	R	K	K	G	V	S	A
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)																	T	T									S	T	T	S	S									T	T		T	T										S	S		S								T	T	T
	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140
Sequence	H	Q	I	T	T	G	E	A	C	H	L	E	A	S	M	I	E	G	A	F	D	L	L	K	D	E	G	A	L	E	K	S	D	F	L	I	I	E	N	V	G	N	L	V	C	P	S	S	Y	N	L	G	A	A	M	N	I	V	L	L	S	V	P	E	G	D	D	K	V	L
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)						T	T		S	S																T	T	T	T	T	T		S								S		S	S	G	G	G	G						S								G	G	G		T	T
	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210
Sequence	K	Y	P	T	M	F	M	C	A	D	A	V	I	I	S	K	A	D	M	V	E	V	F	N	F	R	V	S	Q	V	K	E	D	M	Q	K	L	K	P	E	A	P	I	F	L	M	S	S	K	D	P	K	S	L	E	D	F	K	N	F	L	L	E	K	K	R	E	N	Y	Q
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)		S						T		S							G	G	G	T	T	T	T	T															T	T	S							T	T																			T
	.	.	.	.	.
Sequence	S	T	H	S	F
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)