PHYRE Protein Fold Recognition Server

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Protein Homology/analogY Recognition Engine V 2.2

Fold library entry viewer: c4lpqA_

Fold library id	PDB Header	Molecule	Title
c4lpqA_	PDB header: transferase	Chain: A: PDB Molecule: erfk/ybis/ycfs/ynhg family protein;	PDBTitle: crystal structure of the l,d-transpeptidase (residues 123-326) from2 xylanimonas cellulosilytica dsm 15894

Links to external resources
Added to library: Sat Nov 16 08:59:18 2013

1 . . . . . . . . 10 . . . . . . . . . 20 . . . . . . . . . 30 . . . . . . . . . 40 . . . . . . . . . 50 . . . . . . . . . 60 . . . . . . . . . 70

Sequence E P P A P Q Y P Q R G S T G P E V L A L Q Q R L X D L G Y F I L K A D G D Y G W A T Q Q A V W A F Q K A A G L Y R D G V V G P Q T Q A A L D

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
T T
B S T B
S
S S B
T
S S

. . . . . . . . . 80 . . . . . . . . . 90 . . . . . . . . . 100 . . . . . . . . . 110 . . . . . . . . . 120 . . . . . . . . . 130 . . . . . . . . . 140

Sequence A G Y R P T P R S S S G K V V E I D L D K Q I L L A V E D G R V V R I I N A S S G N G E T Y E A K G R T Y R A T T P R G D F A V Y X Q R D G

Predicted secondary structure

SS confidence

Known secondary structure (DSSP) T
S
S S T T T T T T
B
B
T T
S S

. . . . . . . . . 150 . . . . . . . . . 160 . . . . . . . . . 170 . . . . . . . . . 180 . . . . . . . . . 190 . . . . . . . . . 200 . . . .

Sequence X H S S T L E L G D X W R P K Y F R G G Y A V H G S S S I P T Y P A S H G C V R V S N A A X N W L W D S W G X P I G T R V L L Y

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
S S
S S
T T
S
S S
B S S S
T T
T T

Download: PDB structure FASTA sequence
Hidden Markov model

Image coloured by rainbow N → C terminus

Interactive 3D view in JSmol

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Accessibility Statement

Please cite: Phyre2.2: A Community Resource for Template-based Protein Structure Prediction

Powell HR et al. Journal of Molecular Biology (2025) in press DOI: https://doi.org/10.1016/j.jmb.2025.168960

© Structural Bioinformatics Group, Imperial College, London

Michael Sternberg

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	1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70
Sequence	E	P	P	A	P	Q	Y	P	Q	R	G	S	T	G	P	E	V	L	A	L	Q	Q	R	L	X	D	L	G	Y	F	I	L	K	A	D	G	D	Y	G	W	A	T	Q	Q	A	V	W	A	F	Q	K	A	A	G	L	Y	R	D	G	V	V	G	P	Q	T	Q	A	A	L	D
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)										T	T		B	S														T	B			S			S	S	B																	T				S	S
	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140
Sequence	A	G	Y	R	P	T	P	R	S	S	S	G	K	V	V	E	I	D	L	D	K	Q	I	L	L	A	V	E	D	G	R	V	V	R	I	I	N	A	S	S	G	N	G	E	T	Y	E	A	K	G	R	T	Y	R	A	T	T	P	R	G	D	F	A	V	Y	X	Q	R	D	G
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)		T						S			S	S							T	T	T	T							T	T									B		B								T	T																			S	S
	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.
Sequence	X	H	S	S	T	L	E	L	G	D	X	W	R	P	K	Y	F	R	G	G	Y	A	V	H	G	S	S	S	I	P	T	Y	P	A	S	H	G	C	V	R	V	S	N	A	A	X	N	W	L	W	D	S	W	G	X	P	I	G	T	R	V	L	L	Y
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)					S	S		S	S										T	T							S				S	S			B	S	S	S														T	T				T	T