PHYRE Protein Fold Recognition Server

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Protein Homology/analogY Recognition Engine V 2.0

Fold library entry viewer: c4lnhA_

Fold library id	PDB Header	Molecule	Title
c4lnhA_	PDB header: transferase	Chain: A: PDB Molecule: uridine phosphorylase;	PDBTitle: crystal structure of uridine phosphorylase from vibrio fischeri es114,2 nysgrc target 29520.

Links to external resources
Added to library: Sat Jul 27 08:33:04 2013

1 . . . . . . . . 10 . . . . . . . . . 20 . . . . . . . . . 30 . . . . . . . . . 40 . . . . . . . . . 50 . . . . . . . . . 60 . . . . . . . . . 70

Sequence F Q S X S K Q P H I C V D E N Q V S P Y V I V C G E P D R V N R I V E L X D N V E L L A E N R E Y R V F N G V Y K G T T I T I C S T G I G A

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
S S S
T T T
T T T S
S S
T T S T T T T
S S

. . . . . . . . . 80 . . . . . . . . . 90 . . . . . . . . . 100 . . . . . . . . . 110 . . . . . . . . . 120 . . . . . . . . . 130 . . . . . . . . . 140

Sequence P S X I I A V E E L K L C G A T H V I R V G S A G A X Q D H I Q L G E L I V A E G A V R D E G G S K A Y I S S A Y P A Y A S F A L L K E I S

Predicted secondary structure

SS confidence

Known secondary structure (DSSP) T T
S S T T
T T
S T T S
T T S
B

. . . . . . . . . 150 . . . . . . . . . 160 . . . . . . . . . 170 . . . . . . . . . 180 . . . . . . . . . 190 . . . . . . . . . 200 . . . . . . . . . 210

Sequence H F L E N Q S V K Y Y F G V V R S H D S F Y T D E E D Q L C Q Y W N K K G I L G A D X E T S A L F T V G R L R G L Q V A S I L N N V V L Y Q

Predicted secondary structure

SS confidence

Known secondary structure (DSSP) T S S S
S
S
S T T T
S S T T

. . . . . . . . . 220 . . . . . . . . . 230 . . . . . . . . .

Sequence V N Q Y V N D N K A X X N G E R L A A I T A L E T L C K Q

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
T T

Download: PDB structure FASTA sequence
Hidden Markov model

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Please cite: The Phyre2 web portal for protein modeling, prediction and analysis

Kelley LA et al. Nature Protocols 10, 845-858 (2015) [paper] [Citation link]

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Michael Sternberg

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	1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70
Sequence	F	Q	S	X	S	K	Q	P	H	I	C	V	D	E	N	Q	V	S	P	Y	V	I	V	C	G	E	P	D	R	V	N	R	I	V	E	L	X	D	N	V	E	L	L	A	E	N	R	E	Y	R	V	F	N	G	V	Y	K	G	T	T	I	T	I	C	S	T	G	I	G	A
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)				S	S	S		T	T	T				T	T	T	S		S						S										T	T	S										T	T									T	T										S	S
	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140
Sequence	P	S	X	I	I	A	V	E	E	L	K	L	C	G	A	T	H	V	I	R	V	G	S	A	G	A	X	Q	D	H	I	Q	L	G	E	L	I	V	A	E	G	A	V	R	D	E	G	G	S	K	A	Y	I	S	S	A	Y	P	A	Y	A	S	F	A	L	L	K	E	I	S
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)													T	T													S	S	T	T			T	T												S					T	T	S		T	T	S			B
	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210
Sequence	H	F	L	E	N	Q	S	V	K	Y	Y	F	G	V	V	R	S	H	D	S	F	Y	T	D	E	E	D	Q	L	C	Q	Y	W	N	K	K	G	I	L	G	A	D	X	E	T	S	A	L	F	T	V	G	R	L	R	G	L	Q	V	A	S	I	L	N	N	V	V	L	Y	Q
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)					T	S	S	S											S		S		S	T	T												T						S	S											T	T
	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.
Sequence	V	N	Q	Y	V	N	D	N	K	A	X	X	N	G	E	R	L	A	A	I	T	A	L	E	T	L	C	K	Q
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)																											T	T