PHYRE Protein Fold Recognition Server

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Protein Homology/analogY Recognition Engine V 2.2

Fold library entry viewer: c4lltB_

Fold library id	PDB Header	Molecule	Title
c4lltB_	PDB header: transferase	Chain: B: PDB Molecule: geranyltranstransferase;	PDBTitle: crystal structure of a farnesyl diphosphate synthase from roseobacter2 denitrificans och 114, target efi-509393, with two ipp and calcium3 bound in active site

Links to external resources
Added to library: Sat Jul 27 08:42:11 2013

1 . . . . . . . . 10 . . . . . . . . . 20 . . . . . . . . . 30 . . . . . . . . . 40 . . . . . . . . . 50 . . . . . . . . . 60 . . . . . . . . . 70

Sequence S M F T Q R L D A A A A A V Q A H F D K V L A A F E P L P I V E A M A H A T S G G K R L R G F L V L E T A R L H D I A A G E A I W S A T A I

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
T S
S
S
T T

. . . . . . . . . 80 . . . . . . . . . 90 . . . . . . . . . 100 . . . . . . . . . 110 . . . . . . . . . 120 . . . . . . . . . 130 . . . . . . . . . 140

Sequence E A L H A Y S L V H D D L P C M D N D D M R R G Q P T V H K K W D D A T A V L A G D A L Q T L A F E L V T H P G A S A S A E V R A D L A L S

Predicted secondary structure

SS confidence

Known secondary structure (DSSP) T S T T T T
S T T
S
S G G G
S

. . . . . . . . . 150 . . . . . . . . . 160 . . . . . . . . . 170 . . . . . . . . . 180 . . . . . . . . . 190 . . . . . . . . . 200 . . . . . . . . . 210

Sequence L A R A S G A Q G M V L G Q A L D I A A E T A R A P L S L D E I T R L Q Q G K T G A L I G W S A Q A G A R L A Q A D T A A L K R Y A Q A L G

Predicted secondary structure

SS confidence

Known secondary structure (DSSP) S T T T T
S S
T T T

. . . . . . . . . 220 . . . . . . . . . 230 . . . . . . . . . 240 . . . . . . . . . 250 . . . . . . . . . 260 . . . . . . . . . 270 . . . . . . . . . 280

Sequence L A F Q I A D D I L D V T G D S A Q V G K A V G K D A S A G K A T F V S L L G L D A A R A R A M S L I D E A C D S L A T Y G A K A D T L R E

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
S S
S T T
T G G G G G G G

. . . . . . . . . 290

Sequence T A R F V V R R T H

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)

Download: PDB structure FASTA sequence
Hidden Markov model

Image coloured by rainbow N → C terminus

Interactive 3D view in JSmol

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Accessibility Statement

Please cite: Phyre2.2: A Community Resource for Template-based Protein Structure Prediction

Powell HR et al. Journal of Molecular Biology (2025) in press DOI: https://doi.org/10.1016/j.jmb.2025.168960

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Michael Sternberg

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	1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70
Sequence	S	M	F	T	Q	R	L	D	A	A	A	A	A	V	Q	A	H	F	D	K	V	L	A	A	F	E	P	L	P	I	V	E	A	M	A	H	A	T	S	G	G	K	R	L	R	G	F	L	V	L	E	T	A	R	L	H	D	I	A	A	G	E	A	I	W	S	A	T	A	I
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)																								T	S														S		S															T	T
	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140
Sequence	E	A	L	H	A	Y	S	L	V	H	D	D	L	P	C	M	D	N	D	D	M	R	R	G	Q	P	T	V	H	K	K	W	D	D	A	T	A	V	L	A	G	D	A	L	Q	T	L	A	F	E	L	V	T	H	P	G	A	S	A	S	A	E	V	R	A	D	L	A	L	S
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)												T	S	T	T	T	T			S			T	T								S																						S	G	G	G		S
	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210
Sequence	L	A	R	A	S	G	A	Q	G	M	V	L	G	Q	A	L	D	I	A	A	E	T	A	R	A	P	L	S	L	D	E	I	T	R	L	Q	Q	G	K	T	G	A	L	I	G	W	S	A	Q	A	G	A	R	L	A	Q	A	D	T	A	A	L	K	R	Y	A	Q	A	L	G
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)						S	T	T	T													T		S	S															T															T	T
	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280
Sequence	L	A	F	Q	I	A	D	D	I	L	D	V	T	G	D	S	A	Q	V	G	K	A	V	G	K	D	A	S	A	G	K	A	T	F	V	S	L	L	G	L	D	A	A	R	A	R	A	M	S	L	I	D	E	A	C	D	S	L	A	T	Y	G	A	K	A	D	T	L	R	E
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)																				S	S			S					T	T																												T	G	G	G	G	G	G	G
	.	.	.	.	.	.	.	.	.	290
Sequence	T	A	R	F	V	V	R	R	T	H
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)