PHYRE Protein Fold Recognition Server

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Protein Homology/analogY Recognition Engine V 2.2

Fold library entry viewer: c4lkrA_

Fold library id	PDB Header	Molecule	Title
c4lkrA_	PDB header: transferase	Chain: A: PDB Molecule: purine nucleoside phosphorylase deod-type;	PDBTitle: crystal structure of deod-3 gene product from shewanella oneidensis2 mr-1, nysgrc target 029437

Links to external resources
Added to library: Sat Jul 27 08:29:50 2013

1 . . . . . . . . 10 . . . . . . . . . 20 . . . . . . . . . 30 . . . . . . . . . 40 . . . . . . . . . 50 . . . . . . . . . 60 . . . . . . . . . 70

Sequence T A H I N A Q P T D F A E T V I X P G D P L R A K Y I A E T Y L T D A V E V T N V R N X L G Y T G Y Y Q G Q R I S V X G H G X G I S S X V L

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
T T
S
T T
S
S
S
T
G G G
T T
S S

. . . . . . . . . 80 . . . . . . . . . 90 . . . . . . . . . 100 . . . . . . . . . 110 . . . . . . . . . 120 . . . . . . . . . 130 . . . . . . . . . 140

Sequence Y G H E L I N F F G V K R I I R I G S L G A T Q Q H V E X R D V I L A Q A A G T D S P T N A K R S S G Y H X A T S A T F S L L H K A Y T K A

Predicted secondary structure

SS confidence

Known secondary structure (DSSP) S
S T T
T T
S
T T T T S

. . . . . . . . . 150 . . . . . . . . . 160 . . . . . . . . . 170 . . . . . . . . . 180 . . . . . . . . . 190 . . . . . . . . . 200 . . . . . . . . . 210

Sequence N E K G I S V K V G N V F S G D L Y Y D P D E D X I P A L E R F G V L G I D X E V A G L Y G L A H Q Q G I E S L A I L T V S D H C L T G E E

Predicted secondary structure

SS confidence

Known secondary structure (DSSP) T T
S
T T
S
T T T T
S S T
T T T

. . . . . . . . . 220 . . . . . . . . . 230 . . .

Sequence T T A Q E R Q L S F N N X I E L A L E T A L N

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)

Download: PDB structure FASTA sequence
Hidden Markov model

Image coloured by rainbow N → C terminus

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Accessibility Statement

Please cite: Phyre2.2: A Community Resource for Template-based Protein Structure Prediction

Powell HR et al. Journal of Molecular Biology (2025) in press DOI: https://doi.org/10.1016/j.jmb.2025.168960

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Michael Sternberg

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	1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70
Sequence	T	A	H	I	N	A	Q	P	T	D	F	A	E	T	V	I	X	P	G	D	P	L	R	A	K	Y	I	A	E	T	Y	L	T	D	A	V	E	V	T	N	V	R	N	X	L	G	Y	T	G	Y	Y	Q	G	Q	R	I	S	V	X	G	H	G	X	G	I	S	S	X	V	L
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)		T	T			S		T	T		S		S						S												T										G	G	G									T	T										S	S
	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140
Sequence	Y	G	H	E	L	I	N	F	F	G	V	K	R	I	I	R	I	G	S	L	G	A	T	Q	Q	H	V	E	X	R	D	V	I	L	A	Q	A	A	G	T	D	S	P	T	N	A	K	R	S	S	G	Y	H	X	A	T	S	A	T	F	S	L	L	H	K	A	Y	T	K	A
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)									S															S	T	T			T	T											S		T						T	T	T	S
	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210
Sequence	N	E	K	G	I	S	V	K	V	G	N	V	F	S	G	D	L	Y	Y	D	P	D	E	D	X	I	P	A	L	E	R	F	G	V	L	G	I	D	X	E	V	A	G	L	Y	G	L	A	H	Q	Q	G	I	E	S	L	A	I	L	T	V	S	D	H	C	L	T	G	E	E
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)			T	T												S		T	T		S		T	T								T	T						S	S												T													T	T	T
	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.
Sequence	T	T	A	Q	E	R	Q	L	S	F	N	N	X	I	E	L	A	L	E	T	A	L	N
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)