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  Protein Homology/analogY Recognition Engine V 2.2
 

Fold library entry viewer: c4ljsA_

Fold library idPDB HeaderMoleculeTitle
c4ljsA_PDB header: transport proteinChain: A: PDB Molecule: periplasmic binding protein;PDBTitle: the crystal structure of a periplasmic binding protein from2 veillonella parvula dsm 2008


Added to library: Sat Jul 27 08:44:53 2013
 
Links to external resources


 1........10.........20.........30.........40.........50.........60.........70
Sequence VEDHQSTPVHIKLQPPVTIESFVRRGEPFESTYTAVPERVVAXWQNSIETIIALGEGDRIVAGXGIPDRK
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Known secondary structure (DSSP)


TT





TT

SSSTT
GGG

S
GG
 .........80.........90.........100.........110.........120.........130.........140
Sequence YVRPEYREAYDKIPYKDLKYANLESVLXXKPDLLVGWKSTFTNKXLQTPTFWQARLANVYIAESSLGAQS
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Known secondary structure (DSSP) GS
GGG
SB

GGG
S

S
GGGSSTTTT

TTT

GGGS
TTS
 .........150.........160.........170.........180.........190.........200.........210
Sequence ALTXDXEYKYIRDLGRIFNRNXEAERLIQEXQQSVAYTVAQTAHEKPPKALFIEVQGKHFRLYGHKTLAG
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Known secondary structure (DSSP)


TT
TTTS


TT

TTS
 .........220.........230.........240.........250.........260.........270.........280
Sequence NIGASLHADVIDTETPSISXEDVVEQNPDVIFLIVSDGEYSQADVIXNYVLTQSGLQGVNALRNKRVHFL
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Known secondary structure (DSSP) TT



SSSB



S
SGGGGGS
SGGGGSTT
 .........290.........300.........310......
Sequence PLLAVYSPGIRLLDSIDIVSHGLYPNLYPEGVPDLI
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Known secondary structure (DSSP) GGGTSS
GGG
TTT
TT






Download:PDB structure FASTA sequence

Hidden Markov model

Image coloured by rainbow N → C terminus
Interactive 3D view in JSmol


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Accessibility Statement
Please cite: Phyre2.2: A Community Resource for Template-based Protein Structure Prediction
Powell HR et al. Journal of Molecular Biology (2025) in press DOI: https://doi.org/10.1016/j.jmb.2025.168960
 
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Michael Sternberg  
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