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 Protein Homology/analogY Recognition Engine V 2.0


 

Fold library entry viewer: c4ljkA_

Fold library idPDB HeaderMoleculeTitle
c4ljkA_PDB header: dna binding proteinChain: A: PDB Molecule: dna processing chain a (dpra);PDBTitle: structural insights into the unique single-stranded dna binding mode2 of dna processing protein a from helicobacter pylori


Added to library: Sat Jan 11 09:17:53 2014
 
Links to external resources


 1........10.........20.........30.........40.........50.........60.........70
Sequence XKSHFQYSTLENIPKAFDILKDPPKKLYCVGDTKLLDTPLKVAIIGTRRPTPYSKQHTITLARELAKNGA
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Known secondary structure (DSSP)
B





SS

GGGGGSSS

S


GGGGG
S



SS

TT
 .........80.........90.........100.........110.........120.........130.........140
Sequence VIVSGGALGVDIIAQENALPKTIXLSPCSLDFIYPTNNHKVIQEIAQNGLILSEYEKDFXPIKGSFLARN
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Known secondary structure (DSSP)


TTTTS
SS
TTB
SSGGGSS

SS



 .........150.........160.........170.........180.........190.........200.........210
Sequence RLVIALSDVVIIPQADLKSGSXSSARLAQKYQKPLFVLPQRLNESDGTNELLEKGQAQGIFNIQNFINTL
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Known secondary structure (DSSP)
SS


TTSTT





TTT
TTSS
S
 ......
Sequence LKDYHL
Predicted secondary structure


SS confidence





Known secondary structure (DSSP) TT


Download:PDB structure FASTA sequence

Hidden Markov model

Image coloured by rainbow N → C terminus
Interactive 3D view in JSmol


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Please cite: The Phyre2 web portal for protein modeling, prediction and analysis
Kelley LA et al. Nature Protocols 10, 845-858 (2015) [paper] [Citation link]
 
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Michael Sternberg 
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