Fold library entry viewer: c4lhdB_

Added to library: Sat Oct 19 09:16:53 2013
Links to external resources

	1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70
Sequence	A	I	A	V	D	L	T	K	L	E	E	K	L	A	P	A	D	S	F	L	D	R	H	L	G	P	G	E	T	E	Q	R	Q	M	L	Q	T	L	G	F	D	T	L	G	D	L	I	D	Q	A	V	P	P	A	I	R	F	P	R	S	L	Q	L	P	A	S	Q	S	E	Y
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)											T	T	S												S	S													T		S										S		G	G	G				S
	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140
Sequence	G	A	I	A	Q	L	K	S	I	A	S	K	N	Q	V	F	R	S	Y	I	G	M	G	Y	Y	D	T	I	T	P	P	V	I	Q	R	N	I	L	E	N	P	G	W	Y	T	A	Y	T	P	Y	Q	A	E	I	A	Q	G	R	L	E	A	L	L	N	F	Q	T	M	V	M
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)											T	T	B									T	T														T	T	T						S			S		S	S	G	G	G
	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210
Sequence	D	L	T	G	L	E	I	A	N	A	S	L	L	D	E	G	T	A	A	A	E	A	M	A	L	S	Y	G	V	S	K	S	K	A	N	A	F	F	V	A	Q	D	C	H	P	Q	T	I	E	V	I	K	T	R	A	N	P	L	G	I	E	V	I	V	G	D	H	H	T	F
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)				T		S				S		B	S																			S									T	T	S													G	G	G	T								G	G	G
	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280
Sequence	S	F	S	T	S	I	F	G	A	L	L	Q	Y	P	A	T	D	G	A	V	Y	D	Y	R	S	F	I	D	K	A	H	Q	H	Q	A	L	V	T	L	A	A	D	P	L	S	L	T	L	L	T	P	P	G	E	L	G	A	D	I	A	V	G	S	T	Q	R	F	G	I	P
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)				S										S		T	T	S	B														T	T									T	T	G	G	G	T	B							T		S							T	T	T	T
	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350
Sequence	L	G	Y	G	G	P	H	A	A	Y	F	A	T	K	A	E	Y	Q	R	K	M	P	G	R	I	V	G	V	S	K	D	A	H	G	N	P	A	L	R	L	A	L	Q	S	N	I	C	T	A	Q	V	L	L	A	V	M	A	S	M	Y	G	V	Y	H	G	S	T	G	L	K
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)		G	G	G											G	G	G	T	T	T			S								B	T	T	S														S
	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420
Sequence	N	I	A	L	R	I	H	Q	L	T	V	L	L	A	I	G	L	K	R	L	N	Y	S	L	N	N	D	Y	F	F	D	T	L	R	V	G	V	G	E	Q	S	A	P	A	I	L	K	A	A	E	G	R	G	I	N	L	R	P	L	V	P	G	E	V	G	I	S	L	D	E
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)																				T	T						S	S	B	S	S								T	T												T	T								T	T								T
	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.	.	.	.	.	.	480	.	.	.	.	.	.	.	.	.	490
Sequence	T	V	T	V	Q	D	L	L	D	L	W	Q	V	F	A	G	K	D	N	L	P	F	T	P	E	E	L	W	S	E	V	K	T	S	F	P	A	D	L	T	R	Q	S	L	Y	L	Q	D	A	V	F	N	Q	Y	H	S	E	T	E	L	L	R	Y	L	H	Q	L	E	S	K
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)	T															T	S	S	S		S	S		T	G	G	G	G	G	G							G	G	G	B			S					S	G	G	G	T	S			S														T
	.	.	.	.	.	.	.	.	.	500	.	.	.	.	.	.	.	.	.	510	.	.	.	.	.	.	.	.	.	520	.	.	.	.	.	.	.	.	.	530	.	.	.	.	.	.	.	.	.	540	.	.	.	.	.	.	.	.	.	550	.	.	.	.	.	.	.	.	.	560
Sequence	D	L	A	L	N	T	S	M	I	P	L	G	S	C	T	M	K	L	N	A	T	A	E	M	M	P	V	T	W	P	E	F	G	K	I	H	P	F	A	P	A	G	Q	T	E	G	Y	Q	I	L	F	A	Q	L	E	A	W	L	G	E	I	T	G	F	D	A	I	S	L	Q
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)	S			T	T	T	S				B	T	T	T											G	G	G	G	S					T			T	T	S		G	G	G	B																			T		S
	.	.	.	.	.	.	.	.	.	570	.	.	.	.	.	.	.	.	.	580	.	.	.	.	.	.	.	.	.	590	.	.	.	.	.	.	.	.	.	600	.	.	.	.	.	.	.	.	.	610	.	.	.	.	.	.	.	.	.	620	.	.	.	.	.	.	.	.	.	630
Sequence	P	N	A	G	S	Q	G	E	Y	A	G	L	Q	V	I	R	Q	Y	H	L	S	R	G	E	E	Q	R	N	I	C	L	I	P	E	S	A	H	G	T	N	P	A	S	A	V	M	C	G	M	Q	V	V	P	V	K	C	D	G	E	G	N	I	D	V	E	D	L	T	S	K
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)			S																			T	T		T	T								T	T	S		T									T	T								B		T	T	S	S	B
	.	.	.	.	.	.	.	.	.	640	.	.	.	.	.	.	.	.	.	650	.	.	.	.	.	.	.	.	.	660	.	.	.	.	.	.	.	.	.	670	.	.	.	.	.	.	.	.	.	680	.	.	.	.	.	.	.	.	.	690	.	.	.	.	.	.	.	.	.	700
Sequence	A	E	K	Y	G	D	R	L	A	A	L	M	V	T	Y	P	S	T	H	G	V	F	E	A	T	I	G	T	I	C	D	I	V	H	R	F	G	G	E	V	Y	M	D	G	A	N	M	N	A	Q	V	G	L	C	R	P	A	D	F	G	A	D	V	C	H	L	N	L	H	T
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)				T	G	G	G								S	S		T	T	S				T	T											T	T								T	T	G	G	G	T	T	T	T							T		S
	.	.	.	.	.	.	.	.	.	710	.	.	.	.	.	.	.	.	.	720	.	.	.	.	.	.	.	.	.	730	.	.	.	.	.	.	.	.	.	740	.	.	.	.	.	.	.	.	.	750	.	.	.	.	.	.	.	.	.	760	.	.	.	.	.	.	.	.	.	770
Sequence	F	C	I	P	H	G	G	G	G	P	G	M	G	P	I	G	V	K	S	H	L	Q	A	F	L	P	R	T	D	Q	S	I	G	M	I	S	A	A	P	Y	G	S	A	S	I	L	V	I	S	W	M	Y	I	A	M	M	G	P	Q	G	L	T	K	A	T	E	V	A	I	L
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)						T	T	T											G	G	G	G	G	G	S										S	S	S	S	T	T	S	S	G	G	G
	.	.	.	.	.	.	.	.	.	780	.	.	.	.	.	.	.	.	.	790	.	.	.	.	.	.	.	.	.	800	.	.	.	.	.	.	.	.	.	810	.	.	.	.	.	.	.	.	.	820	.	.	.	.	.	.	.	.	.	830	.	.	.	.	.	.	.	.	.	840
Sequence	S	A	N	Y	M	A	K	R	L	E	N	Y	Y	P	I	L	F	R	G	N	N	E	L	V	A	H	E	C	I	L	D	L	R	P	L	K	K	Q	A	A	I	E	V	E	D	V	A	K	R	L	M	D	F	G	F	H	A	P	T	V	S	W	P	V	L	G	T	M	M	V
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)										T	T	T	S		B					G	G	G			S	S																											T	T							S		S	S	T	T
	.	.	.	.	.	.	.	.	.	850	.	.	.	.	.	.	.	.	.	860	.	.	.	.	.	.	.	.	.	870	.	.	.	.	.	.	.	.	.	880	.	.	.	.	.	.	.	.	.	890	.	.	.	.	.	.	.	.	.	900	.	.	.	.	.	.	.	.	.	910
Sequence	E	P	T	E	S	E	S	L	G	E	L	D	R	F	C	D	A	M	I	A	I	Y	Q	E	A	Q	A	I	T	H	G	E	I	D	P	A	D	N	P	L	K	N	A	P	H	T	A	Q	S	L	I	C	G	E	W	N	H	P	Y	S	Q	E	E	A	A	Y	P	A	P	W
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)				T	T	S																								T	T	S	S		S	S	S	S						S								S	S				S	S	S								S	S	G	G
	.	.	.	.	.	.	.	.	.	920	.	.	.	.	.	.	.	.	.	930	.	.	.	.	.	.	.	.	.	940	.
Sequence	T	K	Q	F	K	F	W	P	A	V	G	R	I	N	N	T	Y	G	D	R	H	L	V	C	S	C	E	G	M	G	G
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)	G	G	T	S					S	S			B								S				S	G	G	G

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PDB structure

FASTA sequence

Hidden Markov model

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