PHYRE Protein Fold Recognition Server

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Protein Homology/analogY Recognition Engine V 2.2

Fold library entry viewer: c4lfgB_

Fold library id	PDB Header	Molecule	Title
c4lfgB_	PDB header: transferase	Chain: B: PDB Molecule: geranylgeranyl diphosphate synthase;	PDBTitle: crystal structure of geranylgeranyl diphosphate synthase sub12742 (target efi-509455) from streptococcus uberis 0140j with bound3 magnesium and isopentyl diphosphate, fully liganded complex;

Links to external resources
Added to library: Sat Jul 13 08:25:17 2013

1 . . . . . . . . 10 . . . . . . . . . 20 . . . . . . . . . 30 . . . . . . . . . 40 . . . . . . . . . 50 . . . . . . . . . 60 . . . . . . . . . 70

Sequence D K L K K I D Q T I H A F Y C E K A V I S E K L N E A V L Y S I N A G G K R I R P I L F L E V I E A L Q I P L T E S H F K A A A A L E M I H

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
S S
S
T T

. . . . . . . . . 80 . . . . . . . . . 90 . . . . . . . . . 100 . . . . . . . . . 110 . . . . . . . . . 120 . . . . . . . . . 130 . . . . . . . . . 140

Sequence T G S L I H D D L P A M D N D D Y R R G Q L T N H K K F D E A T A I L A G D S L F L D A F G M L A E T D F P T D V T V D L V R S L S S A S G

Predicted secondary structure

SS confidence

Known secondary structure (DSSP) T S T T T T
S T T
S
T S
S
S

. . . . . . . . . 150 . . . . . . . . . 160 . . . . . . . . . 170 . . . . . . . . . 180 . . . . . . . . . 190 . . . . . . . . . 200 . . . . . . . . . 210

Sequence T F G M V G G Q M L D M A A E G K K L N L K N L Q L I H R H K T G Q L L A Y P F W A A A R V A Q L D E N L L A T F L E I G M I I G L A F Q V

Predicted secondary structure

SS confidence

Known secondary structure (DSSP) T T T T T T
T T T

. . . . . . . . . 220 . . . . . . . . . 230 . . . . . . . . . 240 . . . . . . . . . 250 . . . . . . . . . 260 . . . . . . . . . 270 . . . . . . . . . 280

Sequence R D D I L D I T A N F E E I G K T P K K D V M A E K M T Y P H L L G L N E S Y Q I L D E S L D Q A E A I L R K L S D E I A F A P Q K I L S L

Predicted secondary structure

SS confidence

Known secondary structure (DSSP) S
S S
T T T T
S S

. . . . . . . .

Sequence I E R L R L D A

Predicted secondary structure

SS confidence

Known secondary structure (DSSP) T

Download: PDB structure FASTA sequence
Hidden Markov model

Image coloured by rainbow N → C terminus

Interactive 3D view in JSmol

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Accessibility Statement

Please cite: Phyre2.2: A Community Resource for Template-based Protein Structure Prediction

Powell HR et al. Journal of Molecular Biology (2025) in press DOI: https://doi.org/10.1016/j.jmb.2025.168960

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Michael Sternberg

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	1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70
Sequence	D	K	L	K	K	I	D	Q	T	I	H	A	F	Y	C	E	K	A	V	I	S	E	K	L	N	E	A	V	L	Y	S	I	N	A	G	G	K	R	I	R	P	I	L	F	L	E	V	I	E	A	L	Q	I	P	L	T	E	S	H	F	K	A	A	A	A	L	E	M	I	H
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)																S	S			S																															T	T
	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140
Sequence	T	G	S	L	I	H	D	D	L	P	A	M	D	N	D	D	Y	R	R	G	Q	L	T	N	H	K	K	F	D	E	A	T	A	I	L	A	G	D	S	L	F	L	D	A	F	G	M	L	A	E	T	D	F	P	T	D	V	T	V	D	L	V	R	S	L	S	S	A	S	G
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)								T	S	T	T	T	T			S			T	T								S																						T	S		S																	S
	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210
Sequence	T	F	G	M	V	G	G	Q	M	L	D	M	A	A	E	G	K	K	L	N	L	K	N	L	Q	L	I	H	R	H	K	T	G	Q	L	L	A	Y	P	F	W	A	A	A	R	V	A	Q	L	D	E	N	L	L	A	T	F	L	E	I	G	M	I	I	G	L	A	F	Q	V
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)	T	T	T											T	T	T																T															T	T
	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280
Sequence	R	D	D	I	L	D	I	T	A	N	F	E	E	I	G	K	T	P	K	K	D	V	M	A	E	K	M	T	Y	P	H	L	L	G	L	N	E	S	Y	Q	I	L	D	E	S	L	D	Q	A	E	A	I	L	R	K	L	S	D	E	I	A	F	A	P	Q	K	I	L	S	L
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)									S						S	S		T	T					T	T																																			S	S
	.	.	.	.	.	.	.	.
Sequence	I	E	R	L	R	L	D	A
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)				T