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  Protein Homology/analogY Recognition Engine V 2.2
 

Fold library entry viewer: c4lduA_

Fold library idPDB HeaderMoleculeTitle
c4lduA_PDB header: dna binding proteinChain: A: PDB Molecule: auxin response factor 5;PDBTitle: crystal structure of the dna binding domain of arabidopsis thaliana2 auxin response factor 5


Added to library: Sat Feb 15 08:19:28 2014
 
Links to external resources


 1........10.........20.........30.........40.........50.........60.........70
Sequence PVINSELWHACAGPLVCLPQVGSLVYYFSQGHSEQVAVSTRRSATTQVPNYPNLPSQLMCQVHNVTLHAD
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Known secondary structure (DSSP)




TT




TT

TS


TT



TT

SS
 .........80.........90.........100.........110.........120.........130.........140
Sequence KDSDEIYAQMSLQPVHSERDVFPVPDFGMLRGSKHPTEFFCKTLTASDTSTHGGFSVPRRAAEKLFPPLD
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Known secondary structure (DSSP) TTT


SSGGG


GGGG








S

STTTSTTT

S



 .........150.........160.........170.........180.........190.........200.........210
Sequence YSAQPPTQELVVRDLHENTWTFRHIYRGQPKRHLLTTGWSLFVGSKRLRAGDSVLFIRDEKSQLMVGVRR
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Known secondary structure (DSSP) TTSSS

TTS
TTTT
TTT

TT

TT


 .........220.........230.........240.........250.........260.........270.........280
Sequence ANLPSSVLSADSMHIGVLAAAAHATANRTPFLIFYNPRACPAEFVIPLAKYRKAICGSQLSVGMRFGMMF
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Known secondary structure (DSSP)




SSS
T


TTT
SS

TTT



TT
 .........290.........300.........310.........320.........330......
Sequence ETEDSGKRRYMGTIVGISDLDPLRWPGSKWRNLQVEWDEPGCNDKPTRVSPWDIET
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Known secondary structure (DSSP)
TTS


SSTTTSTT

TT
S

TTT
S
S
GGG
B


Download:PDB structure FASTA sequence

Hidden Markov model

Image coloured by rainbow N → C terminus
Interactive 3D view in JSmol


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Accessibility Statement
Please cite: Phyre2.2: A Community Resource for Template-based Protein Structure Prediction
Powell HR et al. Journal of Molecular Biology (2025) in press DOI: https://doi.org/10.1016/j.jmb.2025.168960
 
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Michael Sternberg  
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