PHYRE Protein Fold Recognition Server

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Protein Homology/analogY Recognition Engine V 2.0

Fold library entry viewer: c4lcbA_

Fold library id	PDB Header	Molecule	Title
c4lcbA_	PDB header: protein transport	Chain: A: PDB Molecule: cell division protein cdvc, vps4;	PDBTitle: structure of vps4 homolog from acidianus hospitalis

Links to external resources
Added to library: Sat Nov 9 09:22:44 2013

1 . . . . . . . . 10 . . . . . . . . . 20 . . . . . . . . . 30 . . . . . . . . . 40 . . . . . . . . . 50 . . . . . . . . . 60 . . . . . . . . . 70

Sequence K V S F S D I V G L D D V K E A L K E A I I Y P S K R P D L F P L G W P R G I L L Y G P P G N G K T M L A A A V A N E I D S Y F I H V D A A

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
G G G S
S
T
G G G
T T
S S S S S S S T T

. . . . . . . . . 80 . . . . . . . . . 90 . . . . . . . . . 100 . . . . . . . . . 110 . . . . . . . . . 120 . . . . . . . . . 130 . . . . . . . . . 140

Sequence S I M S K G E A E K N V A K I F N T A R E Y S K K D N K P A I I F V D E I D A L L V R V R N Q F L K E M D G I M M V Y V I G A T N K P W R L

Predicted secondary structure

SS confidence

Known secondary structure (DSSP) T T
T
T G G G G
S
G G G S

. . . . . . . . . 150 . . . . . . . . . 160 . . . . . . . . . 170 . . . . . . . . . 180 . . . . . . . . . 190 . . . . . . . . . 200 . . . . . . . . . 210

Sequence D E P F L R R F Q K R I Y V P L P D F N Q R L A L F K Y Y T S K V K L G N V D L Q E L A K M T E G Y S A S D I R D I V Q S A H M R V V K E M

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
T T
T T S
B
S
T T T

. . . . . . . . . 220 . . . . . . . . . 230 . . . . . . . . . 240 . . . . . . . . . 250 . .

Sequence F E K N L S E P R E I T M D D F K E V L K I R K P S V N Q E L L K A Y E A W T E K F

Predicted secondary structure

SS confidence

Known secondary structure (DSSP) T T
S S
B
S S

Download: PDB structure FASTA sequence
Hidden Markov model

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Please cite: The Phyre2 web portal for protein modeling, prediction and analysis

Kelley LA et al. Nature Protocols 10, 845-858 (2015) [paper] [Citation link]

© Structural Bioinformatics Group, Imperial College, London

Michael Sternberg

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	1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70
Sequence	K	V	S	F	S	D	I	V	G	L	D	D	V	K	E	A	L	K	E	A	I	I	Y	P	S	K	R	P	D	L	F	P	L	G	W	P	R	G	I	L	L	Y	G	P	P	G	N	G	K	T	M	L	A	A	A	V	A	N	E	I	D	S	Y	F	I	H	V	D	A	A
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)				G	G	G	S		S												T							G	G	G		T	T				S						S	S	S	S	S	S												T	T
	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140
Sequence	S	I	M	S	K	G	E	A	E	K	N	V	A	K	I	F	N	T	A	R	E	Y	S	K	K	D	N	K	P	A	I	I	F	V	D	E	I	D	A	L	L	V	R	V	R	N	Q	F	L	K	E	M	D	G	I	M	M	V	Y	V	I	G	A	T	N	K	P	W	R	L
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)			T	T																							T									T	G	G	G	G																									S		G	G	G	S
	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210
Sequence	D	E	P	F	L	R	R	F	Q	K	R	I	Y	V	P	L	P	D	F	N	Q	R	L	A	L	F	K	Y	Y	T	S	K	V	K	L	G	N	V	D	L	Q	E	L	A	K	M	T	E	G	Y	S	A	S	D	I	R	D	I	V	Q	S	A	H	M	R	V	V	K	E	M
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)						T	T																								T	T	S		B		S										T	T	T
	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.
Sequence	F	E	K	N	L	S	E	P	R	E	I	T	M	D	D	F	K	E	V	L	K	I	R	K	P	S	V	N	Q	E	L	L	K	A	Y	E	A	W	T	E	K	F
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)			T	T		S	S				B															S	S