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 Protein Homology/analogY Recognition Engine V 2.0


 

Fold library entry viewer: c4l8jA_

Fold library idPDB HeaderMoleculeTitle
c4l8jA_PDB header: transport proteinChain: A: PDB Molecule: putative efflux transporter;PDBTitle: crystal structure of a putative efflux transporter (bacegg_01895) from2 bacteroides eggerthii dsm 20697 at 2.06 a resolution


Added to library: Sat Jul 6 09:43:08 2013
 
Links to external resources


 1........10.........20.........30.........40.........50.........60.........70
Sequence DTALVRPVKTATVSSQSVILKDFSGXVEAVEYVKLAFRVSGQIINLPVVEGQRVKKGQLIAAIDPRDISL
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Known secondary structure (DSSP)

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TT




SS




TT

TT


 .........80.........90.........100.........110.........120.........130.........140
Sequence QYAADKAAYETAAAQVERNKRLLGRQAISLQEYEISVANYQKAKSAYELSTNNXRDTKLLAPFDGSIETR
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Known secondary structure (DSSP) TTT
S
TT
SSS
 .........150.........160.........170.........180.........190.........200.........210
Sequence LVENYQRVNSGEGIVRLVNTRKLRIKFTVPDDYLYLLRAKDATFKVEFDTYKGTVFNARLEEYLDISTDG
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Known secondary structure (DSSP)
S
TT

TT

S


GGGSTT
GGGTT




GGG
 .........220.........230.........240.........250.........260.........270.........280
Sequence TGIPVTIIIDDAAFDRTIYDVKPGFTCNIRLASDIAPFIEEKLXNVPLSAVFGDSENKNTYVWIVKDNKV
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Known secondary structure (DSSP) S


TT

TTTS


TT
S
TT
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GGG
TTTT
 .........290.........300.........310.........320......
Sequence NRREVTVYSPTGEANLLISKGLKPGETVVTAGVYQLVEGQRIKEVK
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Known secondary structure (DSSP)



SSSS




SSS

TT




S
GGG

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Download:PDB structure FASTA sequence

Hidden Markov model

Image coloured by rainbow N → C terminus
Interactive 3D view in JSmol


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Please cite: The Phyre2 web portal for protein modeling, prediction and analysis
Kelley LA et al. Nature Protocols 10, 845-858 (2015) [paper] [Citation link]
 
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Michael Sternberg 
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