PHYRE Protein Fold Recognition Server

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Protein Homology/analogY Recognition Engine V 2.2

Fold library entry viewer: c4l1fB_

Fold library id	PDB Header	Molecule	Title
c4l1fB_	PDB header: electron transport	Chain: B: PDB Molecule: acyl-coa dehydrogenase domain protein;	PDBTitle: electron transferring flavoprotein of acidaminococcus fermentans:2 towards a mechanism of flavin-based electron bifurcation

Links to external resources
Added to library: Sat Jan 18 08:49:38 2014

1 . . . . . . . . 10 . . . . . . . . . 20 . . . . . . . . . 30 . . . . . . . . . 40 . . . . . . . . . 50 . . . . . . . . . 60 . . . . . . . . . 70

Sequence M D F N L T E D Q Q M I K D M A A E F A E K F L A P T V E E R D K A H I W D R K L I D K M G E A G F C G I C F P E E Y G G M G L D V L S Y I

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
S
T T T T T
T G G G T T S
G G G T S

. . . . . . . . . 80 . . . . . . . . . 90 . . . . . . . . . 100 . . . . . . . . . 110 . . . . . . . . . 120 . . . . . . . . . 130 . . . . . . . . . 140

Sequence L A V E E L S K V D D G T G I T L S A N V S L C A T P I Y M F G T E E Q K Q K Y L A P I A E G T H V G A F G L T E P S A G T D A S A Q Q T T

Predicted secondary structure

SS confidence

Known secondary structure (DSSP) T T
T T
T T S
B T T B S S S T T

. . . . . . . . . 150 . . . . . . . . . 160 . . . . . . . . . 170 . . . . . . . . . 180 . . . . . . . . . 190 . . . . . . . . . 200 . . . . . . . . . 210

Sequence A V L K G D K Y I L N G S K I F I T N G K E A D T Y V V F A M T D K S Q G V H G I S A F I L E K G M P G F R F G K I E D K M G G H T S I T A

Predicted secondary structure

SS confidence

Known secondary structure (DSSP) T T T T T T
S S
G G G G G G G T T
T T
S S
T T S

. . . . . . . . . 220 . . . . . . . . . 230 . . . . . . . . . 240 . . . . . . . . . 250 . . . . . . . . . 260 . . . . . . . . . 270 . . . . . . . . . 280

Sequence E L I F E D C E V P K E N L L G K E G E G F K I A M E T L D G G R I G V A A Q A L G I A E G A L A A A V K Y S K E R E Q F G R S I S K F Q A

Predicted secondary structure

SS confidence

Known secondary structure (DSSP) G G G S S T T
T T G G G S

. . . . . . . . . 290 . . . . . . . . . 300 . . . . . . . . . 310 . . . . . . . . . 320 . . . . . . . . . 330 . . . . . . . . . 340 . . . . . . . . . 350

Sequence L Q F M M A D M A T K I E A A R Y L V Y H A A M L K N E G K P Y S E A A A M A K C F A S D V A M E V T T D A V Q I F G G Y G Y T V D Y P A E

Predicted secondary structure

SS confidence

Known secondary structure (DSSP) T
G G G G G S T T S S

. . . . . . . . . 360 . . . . . . . . . 370 . . . . . . . . . 380

Sequence R Y M R N A K I T Q I Y E G T N Q V M R I V T S R A L L R D

Predicted secondary structure

SS confidence

Known secondary structure (DSSP) T T T T S

Download: PDB structure FASTA sequence
Hidden Markov model

Image coloured by rainbow N → C terminus

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Accessibility Statement

Please cite: Phyre2.2: A Community Resource for Template-based Protein Structure Prediction

Powell HR et al. Journal of Molecular Biology (2025) in press DOI: https://doi.org/10.1016/j.jmb.2025.168960

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Michael Sternberg

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	1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70
Sequence	M	D	F	N	L	T	E	D	Q	Q	M	I	K	D	M	A	A	E	F	A	E	K	F	L	A	P	T	V	E	E	R	D	K	A	H	I	W	D	R	K	L	I	D	K	M	G	E	A	G	F	C	G	I	C	F	P	E	E	Y	G	G	M	G	L	D	V	L	S	Y	I
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)				S																				T	T	T	T								T														T	G	G	G	T	T	S		G	G	G	T	S
	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140
Sequence	L	A	V	E	E	L	S	K	V	D	D	G	T	G	I	T	L	S	A	N	V	S	L	C	A	T	P	I	Y	M	F	G	T	E	E	Q	K	Q	K	Y	L	A	P	I	A	E	G	T	H	V	G	A	F	G	L	T	E	P	S	A	G	T	D	A	S	A	Q	Q	T	T
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)								T	T														T	T																						T	T	S									B	T	T	B	S	S	S	T	T
	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210
Sequence	A	V	L	K	G	D	K	Y	I	L	N	G	S	K	I	F	I	T	N	G	K	E	A	D	T	Y	V	V	F	A	M	T	D	K	S	Q	G	V	H	G	I	S	A	F	I	L	E	K	G	M	P	G	F	R	F	G	K	I	E	D	K	M	G	G	H	T	S	I	T	A
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)					T	T													T	T	T	T		S								S		G	G	G	G	G	G	G								T	T		T	T										S	S		T	T	S
	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280
Sequence	E	L	I	F	E	D	C	E	V	P	K	E	N	L	L	G	K	E	G	E	G	F	K	I	A	M	E	T	L	D	G	G	R	I	G	V	A	A	Q	A	L	G	I	A	E	G	A	L	A	A	A	V	K	Y	S	K	E	R	E	Q	F	G	R	S	I	S	K	F	Q	A
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)											G	G	G			S	S	T	T																																										T	T			G	G	G	S
	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350
Sequence	L	Q	F	M	M	A	D	M	A	T	K	I	E	A	A	R	Y	L	V	Y	H	A	A	M	L	K	N	E	G	K	P	Y	S	E	A	A	A	M	A	K	C	F	A	S	D	V	A	M	E	V	T	T	D	A	V	Q	I	F	G	G	Y	G	Y	T	V	D	Y	P	A	E
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)																													T																														G	G	G	G	G	S	T	T	S	S
	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380
Sequence	R	Y	M	R	N	A	K	I	T	Q	I	Y	E	G	T	N	Q	V	M	R	I	V	T	S	R	A	L	L	R	D
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)										T	T	T	T	S