PHYRE Protein Fold Recognition Server

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Protein Homology/analogY Recognition Engine V 2.2

Fold library entry viewer: c4l0mA_

Fold library id	PDB Header	Molecule	Title
c4l0mA_	PDB header: hydrolase	Chain: A: PDB Molecule: putative 5'-methylthioadenosine/s-adenosylhomocysteine	PDBTitle: crystal structure of a putative 5'-methylthioadenosine/s-2 adenosylhomocysteine nucleosidase from borrelia burgdorferi b31 bound3 to adenine (target nysgrc-029268 )

Links to external resources
Added to library: Sat Aug 17 08:24:24 2013

1 . . . . . . . . 10 . . . . . . . . . 20 . . . . . . . . . 30 . . . . . . . . . 40 . . . . . . . . . 50 . . . . . . . . . 60 . . . . . . . . . 70

Sequence X I L I I S A X Q E E S E E I N K I L D N K E E I V L N D Y L E N K K I Y K G K I L G K D V I S L T T G I G K V N A A T W S S Q I I S K Y K

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
S S T T
T T S
T T
S S S

. . . . . . . . . 80 . . . . . . . . . 90 . . . . . . . . . 100 . . . . . . . . . 110 . . . . . . . . . 120 . . . . . . . . . 130 . . . . . . . . . 140

Sequence I T H I I N S G S S G G I K E N S N L K I L D I I V S S E T A Y Y D F D L T K F G H K I G Q V P N L P Q K F K A D E E L L K K V A N I V D N

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
S S
T T
S S
G G G T
T T
T T S
S S
T

. . . . . . . . . 150 . . . . . . . . . 160 . . . . . . . . . 170 . . . . . . . . . 180 . . . . . . . . . 190 . . . . . . . . . 200 . . . . . . . . . 210

Sequence K L L N I D I H I G L I L T G D Q F V D N E K N L E T I K K N F K D A L A V D X E G A A I A Q V A H I F K I P F I I I R S I S D L P N N K D

Predicted secondary structure

SS confidence

Known secondary structure (DSSP) T
S S S
S S
S S T
T T
S S T T
T T S T T

. . . . . . . . . 220 . . . . . . . . . 230 . . . . . . .

Sequence N H I D F N K F L K T S S I N S S K X T K E L I R L I

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)

Download: PDB structure FASTA sequence
Hidden Markov model

Image coloured by rainbow N → C terminus

Interactive 3D view in JSmol

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Accessibility Statement

Please cite: Phyre2.2: A Community Resource for Template-based Protein Structure Prediction

Powell HR et al. Journal of Molecular Biology (2025) in press DOI: https://doi.org/10.1016/j.jmb.2025.168960

© Structural Bioinformatics Group, Imperial College, London

Michael Sternberg

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	1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70
Sequence	X	I	L	I	I	S	A	X	Q	E	E	S	E	E	I	N	K	I	L	D	N	K	E	E	I	V	L	N	D	Y	L	E	N	K	K	I	Y	K	G	K	I	L	G	K	D	V	I	S	L	T	T	G	I	G	K	V	N	A	A	T	W	S	S	Q	I	I	S	K	Y	K
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)							S	S									T	T											T	T	S											T	T										S	S															S
	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140
Sequence	I	T	H	I	I	N	S	G	S	S	G	G	I	K	E	N	S	N	L	K	I	L	D	I	I	V	S	S	E	T	A	Y	Y	D	F	D	L	T	K	F	G	H	K	I	G	Q	V	P	N	L	P	Q	K	F	K	A	D	E	E	L	L	K	K	V	A	N	I	V	D	N
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)																S	S				T	T											S	S				G	G	G	T			T	T			T	T	S		S	S																	T
	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210
Sequence	K	L	L	N	I	D	I	H	I	G	L	I	L	T	G	D	Q	F	V	D	N	E	K	N	L	E	T	I	K	K	N	F	K	D	A	L	A	V	D	X	E	G	A	A	I	A	Q	V	A	H	I	F	K	I	P	F	I	I	I	R	S	I	S	D	L	P	N	N	K	D
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)	T		S	S	S											S	S				S	S	T										T	T						S	S											T	T													T	T	S	T	T
	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.
Sequence	N	H	I	D	F	N	K	F	L	K	T	S	S	I	N	S	S	K	X	T	K	E	L	I	R	L	I
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)