PHYRE Protein Fold Recognition Server

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Protein Homology/analogY Recognition Engine V 2.0

Fold library entry viewer: c4l0jA_

Fold library id	PDB Header	Molecule	Title
c4l0jA_	PDB header: hydrolase	Chain: A: PDB Molecule: dna helicase i;	PDBTitle: structure of a translocation signal domain mediating conjugative2 transfer by type iv secretion systems

Links to external resources
Added to library: Sat Jun 22 08:26:34 2013

1 . . . . . . . . 10 . . . . . . . . . 20 . . . . . . . . . 30 . . . . . . . . . 40 . . . . . . . . . 50 . . . . . . . . . 60 . . . . . . . . . 70

Sequence D R N V R Y A R L A G D F A A S V K A G E E S V A Q V S G V R E Q A I L T Q A I R S E L K T Q G V L G H P E V T X T A L S P V W L D S R S R

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
T T
S S T T S S
S
T T T T

. . . . . . . . . 80 . . . . . . . . . 90 . . . . . . . . . 100 . . . . . . . . . 110 . . . . . . . . . 120 . . . . . . . . . 130 . . . . . . . . . 140

Sequence Y L R D X Y R P G X V X E Q W N P E T R S H D R Y V I D R V T A Q S H S L T L R D A Q G E T Q V V R I S S L D S S W S L F R P E K X P V A D

Predicted secondary structure

SS confidence

Known secondary structure (DSSP) T
G G G
T T
T T T T T T T T
T T S
G G G
T T
T

. . . . . . . . . 150 . . . . . . . . . 160 . . . . . . . . . 170 . . . . . . . . . 180 . . . . . . . . . 190 . . . . . . . . . 200 . . . . . . . . . 210

Sequence G E R L R V T G K I P G L R V S G G D R L Q V A S V S E D A X T V V V P G R A E P A S L P V S D S P F T A L K L E N G W V E T P G H S V S D

Predicted secondary structure

SS confidence

Known secondary structure (DSSP) T
S
T T
T T
S S
T T
S S
S T T T
B S
S S
S S S
S
S

. . . . . .

Sequence S A T V F A

Predicted secondary structure

SS confidence

Known secondary structure (DSSP) S

Download: PDB structure FASTA sequence
Hidden Markov model

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Please cite: The Phyre2 web portal for protein modeling, prediction and analysis

Kelley LA et al. Nature Protocols 10, 845-858 (2015) [paper] [Citation link]

© Structural Bioinformatics Group, Imperial College, London

Michael Sternberg

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	1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70
Sequence	D	R	N	V	R	Y	A	R	L	A	G	D	F	A	A	S	V	K	A	G	E	E	S	V	A	Q	V	S	G	V	R	E	Q	A	I	L	T	Q	A	I	R	S	E	L	K	T	Q	G	V	L	G	H	P	E	V	T	X	T	A	L	S	P	V	W	L	D	S	R	S	R
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)																			T	T								S	S																		T	T	S	S		S															T	T	T	T
	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140
Sequence	Y	L	R	D	X	Y	R	P	G	X	V	X	E	Q	W	N	P	E	T	R	S	H	D	R	Y	V	I	D	R	V	T	A	Q	S	H	S	L	T	L	R	D	A	Q	G	E	T	Q	V	V	R	I	S	S	L	D	S	S	W	S	L	F	R	P	E	K	X	P	V	A	D
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)	T		G	G	G			T	T								T	T	T	T												T	T	T	T							T	T	S							G	G	G			T	T													T
	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210
Sequence	G	E	R	L	R	V	T	G	K	I	P	G	L	R	V	S	G	G	D	R	L	Q	V	A	S	V	S	E	D	A	X	T	V	V	V	P	G	R	A	E	P	A	S	L	P	V	S	D	S	P	F	T	A	L	K	L	E	N	G	W	V	E	T	P	G	H	S	V	S	D
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)	T							S			T	T					T	T										S	S							T	T		S	S									S	T	T	T		B	S					S	S			S	S	S		S		S
	.	.	.	.	.	.
Sequence	S	A	T	V	F	A
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)	S