PHYRE Protein Fold Recognition Server

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Protein Homology/analogY Recognition Engine V 2.2

Fold library entry viewer: c4kzsA_

Fold library id	PDB Header	Molecule	Title
c4kzsA_	PDB header: unknown function	Chain: A: PDB Molecule: lpp20 lipofamily protein;	PDBTitle: crystal structure of the secreted protein hp1454 from the human2 pathogen helicobacter pylori

Links to external resources
Added to library: Sat Jun 7 08:15:20 2014

1 . . . . . . . . 10 . . . . . . . . . 20 . . . . . . . . . 30 . . . . . . . . . 40 . . . . . . . . . 50 . . . . . . . . . 60 . . . . . . . . . 70

Sequence Q K G Y L Y G S G S A T S K E A S K Q K A L A D L V A S I S V V V N S Q I H I Q K S R I N L K T D D L E L N N V E I V N Q E V Q K G I Y Y T

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
S S T T S
S
G G G
S
T T

. . . . . . . . . 80 . . . . . . . . . 90 . . . . . . . . . 100 . . . . . . . . . 110 . . . . . . . . . 120 . . . . . . . . . 130 . . . . . . . . . 140

Sequence R V R I N Q N L F L Q G L R D K Y N A L Y G Q F S T L M P K V C K G V F L Q Q S K S M G D L L A K A M P I E R I L K A Y S V P V G S L E N Y

Predicted secondary structure

SS confidence

Known secondary structure (DSSP) G G G S S T T S S
T T

. . . . . . . . . 150 . . . . . . . . . 160 . . . . . . . . . 170 . . . . . . . . . 180 . . . . . . . . . 190 . . . . . . . . . 200 . . . . . . . . . 210

Sequence E K I Y Y Q N A F K P K V Q I T F D N N S D A E I K A A L I S A Y A R V L T P S D E E K L Y Q I K N E V F T D S A N G I T R I R V V V S A S

Predicted secondary structure

SS confidence

Known secondary structure (DSSP) T T T S S
S S
T T T
S S S
B S S S B
B B T T B

. . . . . . . . . 220 . . . . . . . . . 230 . . . . . . . . . 240 . .

Sequence D C Q G T P V L N R S L E V D E K N K N F A I T R L Q S L L Y K

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
G G G G T T T T T S

Download: PDB structure FASTA sequence
Hidden Markov model

Image coloured by rainbow N → C terminus

Interactive 3D view in JSmol

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Accessibility Statement

Please cite: Phyre2.2: A Community Resource for Template-based Protein Structure Prediction

Powell HR et al. Journal of Molecular Biology (2025) in press DOI: https://doi.org/10.1016/j.jmb.2025.168960

© Structural Bioinformatics Group, Imperial College, London

Michael Sternberg

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	1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70
Sequence	Q	K	G	Y	L	Y	G	S	G	S	A	T	S	K	E	A	S	K	Q	K	A	L	A	D	L	V	A	S	I	S	V	V	V	N	S	Q	I	H	I	Q	K	S	R	I	N	L	K	T	D	D	L	E	L	N	N	V	E	I	V	N	Q	E	V	Q	K	G	I	Y	Y	T
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)												S	S																										T	T	S					S				G	G	G			S										T	T
	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140
Sequence	R	V	R	I	N	Q	N	L	F	L	Q	G	L	R	D	K	Y	N	A	L	Y	G	Q	F	S	T	L	M	P	K	V	C	K	G	V	F	L	Q	Q	S	K	S	M	G	D	L	L	A	K	A	M	P	I	E	R	I	L	K	A	Y	S	V	P	V	G	S	L	E	N	Y
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)																									G	G	G	S	S	T	T	S	S				T																								T
	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210
Sequence	E	K	I	Y	Y	Q	N	A	F	K	P	K	V	Q	I	T	F	D	N	N	S	D	A	E	I	K	A	A	L	I	S	A	Y	A	R	V	L	T	P	S	D	E	E	K	L	Y	Q	I	K	N	E	V	F	T	D	S	A	N	G	I	T	R	I	R	V	V	V	S	A	S
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)						T	T	T	S	S									S	S														T	T	T							S	S	S							B	S	S	S	B					B	B	T	T	B
	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.
Sequence	D	C	Q	G	T	P	V	L	N	R	S	L	E	V	D	E	K	N	K	N	F	A	I	T	R	L	Q	S	L	L	Y	K
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)										G	G	G	G	T												T	T	T	T	S