PHYRE Protein Fold Recognition Server

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Protein Homology/analogY Recognition Engine V 2.0

Fold library entry viewer: c4kv7A_

Fold library id	PDB Header	Molecule	Title
c4kv7A_	PDB header: unknown function	Chain: A: PDB Molecule: probable leucine/isoleucine/valine-binding protein;	PDBTitle: the crystal structure of a possible leucine/isoleucine/valine-binding2 protein from rhodopirellula baltica sh 1

Links to external resources
Added to library: Sat Jun 8 09:23:02 2013

1 . . . . . . . . 10 . . . . . . . . . 20 . . . . . . . . . 30 . . . . . . . . . 40 . . . . . . . . . 50 . . . . . . . . . 60 . . . . . . . . . 70

Sequence D A T P V D A Q L L K F G X S T A L S G P A A E L G I N X R H G I L A A F D E A K A K N H L P S K T L K L I A L D D G Y E P A R T A P N X H

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
S S S T T T T S S T T
T T

. . . . . . . . . 80 . . . . . . . . . 90 . . . . . . . . . 100 . . . . . . . . . 110 . . . . . . . . . 120 . . . . . . . . . 130 . . . . . . . . . 140

Sequence R L T D E H E V L A V V G N V G T P T A I T A I P I A Q Q T K T P F F G A F T G A S A L R K V E F V I N Y R A S Y A E E T A A X V D A L V A

Predicted secondary structure

SS confidence

Known secondary structure (DSSP) T T T
S
B
T T
S
B
G G G
T T B
S

. . . . . . . . . 150 . . . . . . . . . 160 . . . . . . . . . 170 . . . . . . . . . 180 . . . . . . . . . 190 . . . . . . . . . 200 . . . . . . . . . 210

Sequence K G I K P E E I G F F T Q N D S Y G D D G F F G G L A A I R R H Q S V K V S S L P H G R Y R R N T S Q V E D G L A D L L X H Q P L P K A V I

Predicted secondary structure

SS confidence

Known secondary structure (DSSP) T T
G G G S S S
G G G S
T T
T
S S
S

. . . . . . . . . 220 . . . . . . . . . 230 . . . . . . . . . 240 . . . . . . . . . 250 . . . . . . . . . 260 . . . . . . . . . 270 . . . . . . . . . 280

Sequence X V G T Y E P C S K L I R X A R X N N F N P Q F L A V S F V G A D A L Q R S L G D L A N G I V A T Q V V P H F D S D L P L V R E Y R D A X R

Predicted secondary structure

SS confidence

Known secondary structure (DSSP) S
T T
G G G
G G G G T T
S S
T T
S

. . . . . . . . . 290 . . . . . . . . . 300 . . . . . . . . . 310 . . . . . . . . . 320 . . . . . . . . . 330 . . . . . . . . . 340 . . . . . . . . . 350

Sequence D Y D P E L P L S F V S L E G Y I V G R I L V K A V T S I K G E I S R S S I A A A L E Q L G Q F D I G L G A P L T L G P N D H Q A S S K V W

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
T T S
S
T
S S S S S
B T T B
B

. . . . . . . . . 360 . . . . . . . . .

Sequence P V L I G A D S S Q S L A W E E L L S

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
S S
G G G T T

Download: PDB structure FASTA sequence
Hidden Markov model

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Please cite: The Phyre2 web portal for protein modeling, prediction and analysis

Kelley LA et al. Nature Protocols 10, 845-858 (2015) [paper] [Citation link]

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Michael Sternberg

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	1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70
Sequence	D	A	T	P	V	D	A	Q	L	L	K	F	G	X	S	T	A	L	S	G	P	A	A	E	L	G	I	N	X	R	H	G	I	L	A	A	F	D	E	A	K	A	K	N	H	L	P	S	K	T	L	K	L	I	A	L	D	D	G	Y	E	P	A	R	T	A	P	N	X	H
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)																		S	S	S	T	T																					T	T	S	S	T	T											T	T
	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140
Sequence	R	L	T	D	E	H	E	V	L	A	V	V	G	N	V	G	T	P	T	A	I	T	A	I	P	I	A	Q	Q	T	K	T	P	F	F	G	A	F	T	G	A	S	A	L	R	K	V	E	F	V	I	N	Y	R	A	S	Y	A	E	E	T	A	A	X	V	D	A	L	V	A
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)				T	T	T			S						B															T	T					S		B				G	G	G				T	T			B		S
	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210
Sequence	K	G	I	K	P	E	E	I	G	F	F	T	Q	N	D	S	Y	G	D	D	G	F	F	G	G	L	A	A	I	R	R	H	Q	S	V	K	V	S	S	L	P	H	G	R	Y	R	R	N	T	S	Q	V	E	D	G	L	A	D	L	L	X	H	Q	P	L	P	K	A	V	I
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)	T	T			G	G	G							S	S																		S				G	G	G	S							T	T													T		S	S			S
	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280
Sequence	X	V	G	T	Y	E	P	C	S	K	L	I	R	X	A	R	X	N	N	F	N	P	Q	F	L	A	V	S	F	V	G	A	D	A	L	Q	R	S	L	G	D	L	A	N	G	I	V	A	T	Q	V	V	P	H	F	D	S	D	L	P	L	V	R	E	Y	R	D	A	X	R
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)			S															T	T									G	G	G										G	G	G	G	T	T						S	S			T	T			S
	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350
Sequence	D	Y	D	P	E	L	P	L	S	F	V	S	L	E	G	Y	I	V	G	R	I	L	V	K	A	V	T	S	I	K	G	E	I	S	R	S	S	I	A	A	A	L	E	Q	L	G	Q	F	D	I	G	L	G	A	P	L	T	L	G	P	N	D	H	Q	A	S	S	K	V	W
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)				T	T	S																									S														T					S	S	S	S	S					B	T	T	B		B
	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.
Sequence	P	V	L	I	G	A	D	S	S	Q	S	L	A	W	E	E	L	L	S
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)						S	S							G	G	G	T	T