PHYRE Protein Fold Recognition Server

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Protein Homology/analogY Recognition Engine V 2.0

Fold library entry viewer: c4ku4B_

Fold library id	PDB Header	Molecule	Title
c4ku4B_	PDB header: signaling protein	Chain: B: PDB Molecule: ras-3 from cryphonectria parasitica;	PDBTitle: crystal structure of a ras-like protein from cryphonectria parasitica2 in complex with gdp

Links to external resources
Added to library: Sat Jun 8 09:41:37 2013

1 . . . . . . . . 10 . . . . . . . . . 20 . . . . . . . . . 30 . . . . . . . . . 40 . . . . . . . . . 50 . . . . . . . . . 60 . . . . . . . . . 70

Sequence G A G K I T D K I A M L G E G G V G K T S L T V N L T K H V F S E T Y D P T L E D S Y R R Q C V I D G I P S H L E I L D T A Y G A L R E Q W

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
T T S
T T S S T T
T T T T T
S S
T T
S T

. . . . . . . . . 80 . . . . . . . . . 90 . . . . . . . . . 100 . . . . . . . . . 110 . . . . . . . . . 120 . . . . . . . . . 130 . . . . . . . . . 140

Sequence I R Q N E L F V I V F D V T R R S S F E A A E R L F E E V I Q T K R K L D P F A P S L V V L V G N K C D L D T R R E V G T L E G S S L A K K

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
S T T
G G G
T T
G G G
S S

. . . . . . . . . 150 . . . . . . . . . 160 . . . . . . . . . 170 .

Sequence L G C G F V E T S A K L G T N V E E A F F S V V R A D R R R K

Predicted secondary structure

SS confidence

Known secondary structure (DSSP) T
B T T T T B T

Download: PDB structure FASTA sequence
Hidden Markov model

Image coloured by rainbow N → C terminus

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Please cite: The Phyre2 web portal for protein modeling, prediction and analysis

Kelley LA et al. Nature Protocols 10, 845-858 (2015) [paper] [Citation link]

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Michael Sternberg

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	1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70
Sequence	G	A	G	K	I	T	D	K	I	A	M	L	G	E	G	G	V	G	K	T	S	L	T	V	N	L	T	K	H	V	F	S	E	T	Y	D	P	T	L	E	D	S	Y	R	R	Q	C	V	I	D	G	I	P	S	H	L	E	I	L	D	T	A	Y	G	A	L	R	E	Q	W
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)		T	T	S											T	T	S	S									T	T		T	T	T	T	T				S	S											T	T														S	T
	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140
Sequence	I	R	Q	N	E	L	F	V	I	V	F	D	V	T	R	R	S	S	F	E	A	A	E	R	L	F	E	E	V	I	Q	T	K	R	K	L	D	P	F	A	P	S	L	V	V	L	V	G	N	K	C	D	L	D	T	R	R	E	V	G	T	L	E	G	S	S	L	A	K	K
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)					S								T	T																											G	G	G								T	T		G	G	G		S	S
	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.
Sequence	L	G	C	G	F	V	E	T	S	A	K	L	G	T	N	V	E	E	A	F	F	S	V	V	R	A	D	R	R	R	K
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)		T							B	T	T	T	T	B	T