PHYRE Protein Fold Recognition Server

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Protein Homology/analogY Recognition Engine V 2.0

Fold library entry viewer: c4kr5B_

Fold library id	PDB Header	Molecule	Title
c4kr5B_	PDB header: transport protein	Chain: B: PDB Molecule: glutamine abc transporter permease and substrate binding	PDBTitle: crystal structure of lactococcus lactis glnp substrate binding domain2 2 (sbd2) in open conformation

Links to external resources
Added to library: Sat Sep 14 09:11:22 2013

1 . . . . . . . . 10 . . . . . . . . . 20 . . . . . . . . . 30 . . . . . . . . . 40 . . . . . . . . . 50 . . . . . . . . . 60 . . . . . . . . . 70

Sequence G M A T P K K D V Y T I A S D N S F A P F E F Q N D D K Q F T G I D V D L L N A I A K N Q G F K L K W N F I G F Q A A V D S V Q S G H A D G

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
S S S S
S S B T T T B
T T S
S T
T S
S

. . . . . . . . . 80 . . . . . . . . . 90 . . . . . . . . . 100 . . . . . . . . . 110 . . . . . . . . . 120 . . . . . . . . . 130 . . . . . . . . . 140

Sequence M M S G M S I T D A R K Q V F D Y G S P Y Y S S N L T I A T S S T D D S I K S W K D L K G K T L G A K N G T A S F D Y L N A H A K E Y G Y T

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
S S
B
T T
S
T T
S
S S G G G G T T
T T S T

. . . . . . . . . 150 . . . . . . . . . 160 . . . . . . . . . 170 . . . . . . . . . 180 . . . . . . . . . 190 . . . . . . . . . 200 . . . . . . . . . 210

Sequence V K T F T D A T T M Y S S L N N G S I N A L M D D E P V I K Y A I K Q G Q K F A T P I K P I P D G Q Y G F A V K K G S N P E L I E M F N N G

Predicted secondary structure

SS confidence

Known secondary structure (DSSP) S S T S S S T
S
T T S

. . . . . . . . . 220 . . . . . . . . . 230 . .

Sequence L A N L R A N G E Y D K I I D K Y L E S D A

Predicted secondary structure

SS confidence

Known secondary structure (DSSP) S S

Download: PDB structure FASTA sequence
Hidden Markov model

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Please cite: The Phyre2 web portal for protein modeling, prediction and analysis

Kelley LA et al. Nature Protocols 10, 845-858 (2015) [paper] [Citation link]

© Structural Bioinformatics Group, Imperial College, London

Michael Sternberg

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	1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70
Sequence	G	M	A	T	P	K	K	D	V	Y	T	I	A	S	D	N	S	F	A	P	F	E	F	Q	N	D	D	K	Q	F	T	G	I	D	V	D	L	L	N	A	I	A	K	N	Q	G	F	K	L	K	W	N	F	I	G	F	Q	A	A	V	D	S	V	Q	S	G	H	A	D	G
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)						S	S	S	S							S	S	B	T	T	T	B				T	T	S				S														T																				T	S		S
	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140
Sequence	M	M	S	G	M	S	I	T	D	A	R	K	Q	V	F	D	Y	G	S	P	Y	Y	S	S	N	L	T	I	A	T	S	S	T	D	D	S	I	K	S	W	K	D	L	K	G	K	T	L	G	A	K	N	G	T	A	S	F	D	Y	L	N	A	H	A	K	E	Y	G	Y	T
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)			S	S		B							T	T					S													T	T			S		S	S	G	G	G	G	T	T							T	T	S														T
	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210
Sequence	V	K	T	F	T	D	A	T	T	M	Y	S	S	L	N	N	G	S	I	N	A	L	M	D	D	E	P	V	I	K	Y	A	I	K	Q	G	Q	K	F	A	T	P	I	K	P	I	P	D	G	Q	Y	G	F	A	V	K	K	G	S	N	P	E	L	I	E	M	F	N	N	G
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)					S	S											T	S	S	S																T							S														T	T	S
	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.
Sequence	L	A	N	L	R	A	N	G	E	Y	D	K	I	I	D	K	Y	L	E	S	D	A
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)								S										S