Standard Mode | Switch to Expert Mode | Login to view past jobsRetrieve Phyre Job Id
 
Subscribe to Phyre at Google Groups
Email:
Visit Phyre at Google Groups
 Protein Homology/analogY Recognition Engine V 2.0


 

Fold library entry viewer: c4kqcA_

Fold library idPDB HeaderMoleculeTitle
c4kqcA_PDB header: transport proteinChain: A: PDB Molecule: periplasmic binding protein/laci transcriptional regulator;PDBTitle: abc transporter, laci family transcriptional regulator from2 brachyspira murdochii


Added to library: Sat Jun 8 10:22:27 2013
 
Links to external resources


 1........10.........20.........30.........40.........50.........60.........70
Sequence SNADPYIAVVSKGFQHKFWVTVRDGAEAAAKQNGVKISFVGPETESDSKIQQDLLDSEINKNPDAIAFAA
Predicted secondary structure
























SS confidence





































































Known secondary structure (DSSP)

SS



SSSTT


SSTT
T

S


 .........80.........90.........100.........110.........120.........130.........140
Sequence VTGDFTEQIKRIKEKNIPLIGFDSGILPDQAQGAVLATASTDNRAAAAIVADKXFEALKTRIAAFTSDNK
Predicted secondary structure



































SS confidence





































































Known secondary structure (DSSP)
SS

TT

TT
S
GGG
TT


TSBTTB
 .........150.........160.........170.........180.........190.........200.........210
Sequence AKIAVLQLDNSDTGIGRAEGFVKRFTELADGDAATAGKYALQVIVPTTQNEADIANEVNALRGKSVLGIY
Predicted secondary structure





























SS confidence





































































Known secondary structure (DSSP)


SSSTTTTTS

SSSSTTTTTT
S
 .........220.........230.........240.........250.........260.........270.........280
Sequence LSNEAXARGFLVVYKSAEAGAANTIVGDAQDGGDLVVXGFDSGKPQLDAIRNGIIQGSVTQDPYSIGFQA
Predicted secondary structure




















SS confidence





































































Known secondary structure (DSSP)
S

B
STT
TTBSTT
STTSS

S

TTSS


 .........290.........300.........310.........
Sequence VTLAYKASKGESVSNIDTGAKWYDKTNIDDPEIAKLLYE
Predicted secondary structure














SS confidence






































Known secondary structure (DSSP) TT








TTTTTSTT



Download:PDB structure FASTA sequence

Hidden Markov model

Image coloured by rainbow N → C terminus
Interactive 3D view in JSmol


Phyre is now FREE for commercial users!

All images and data generated by Phyre2 are free to use in any publication with acknowledgement

Accessibility Statement
Please cite: The Phyre2 web portal for protein modeling, prediction and analysis
Kelley LA et al. Nature Protocols 10, 845-858 (2015) [paper] [Citation link]
 
© Structural Bioinformatics Group, Imperial College, London
Michael Sternberg 
Disclaimer
Terms and Conditions
Structural Biology Group logo Imperial logo
BBSRC logo
Phyre2 is part of Genome3D